Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P04
         (363 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48055-3|CAH04721.1|   35|Caenorhabditis elegans Hypothetical pr...    48   3e-06
AF016676-1|AAG24103.1|  598|Caenorhabditis elegans Hypothetical ...    29   1.00 
U55373-6|AAC25889.1|  250|Caenorhabditis elegans Hypothetical pr...    26   7.0  
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    26   7.0  
AL110500-13|CAB54495.1|  791|Caenorhabditis elegans Hypothetical...    26   9.3  

>Z48055-3|CAH04721.1|   35|Caenorhabditis elegans Hypothetical
           protein T07A5.5 protein.
          Length = 35

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 17/31 (54%), Positives = 28/31 (90%)
 Frame = +2

Query: 98  MITDIQLAVFSNILGVSIFLLVILYHYINAN 190
           MI+D+QL + +NILG+++ +LV+L+HY+NAN
Sbjct: 1   MISDVQLGIAANILGIAMLMLVVLFHYLNAN 31


>AF016676-1|AAG24103.1|  598|Caenorhabditis elegans Hypothetical
           protein F41B5.6 protein.
          Length = 598

 Score = 29.1 bits (62), Expect = 1.00
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 10  VSTRIQKNLN--TKLIHNFNNLIQFKTSNSKNDHRHPARSFLQHF 138
           V+T IQ  +N  T+ +  +NN  +F  S + N+H+   R+F+  +
Sbjct: 52  VATEIQSEMNRITQYMKQWNNQSKFLDSEAINEHQSSNRNFMSEW 96


>U55373-6|AAC25889.1|  250|Caenorhabditis elegans Hypothetical
           protein F26F12.2 protein.
          Length = 250

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +1

Query: 34  LNTKLIHNFNNLIQFKTSN---SKNDHRHPARS 123
           L  KLI N+NNL + K +N    KN+ + P +S
Sbjct: 87  LEEKLIQNYNNLARPKLNNLDAPKNEPKSPIQS 119


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
           (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -1

Query: 246 IRDTNAFTMAAIDLYHLELFAFM**YRITNKNMETPKMLEKTASWMSVIIFRVGC 82
           I  TN   +  I LY +E F      ++TNK +   +++EK      +I  R  C
Sbjct: 849 INATNGTIVQTIPLYSMESFK-----KLTNKKLIPTQLIEKGVKIEHIISIRSSC 898


>AL110500-13|CAB54495.1|  791|Caenorhabditis elegans Hypothetical
           protein Y87G2A.12 protein.
          Length = 791

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 10  VSTRIQKNLN--TKLIHNFNNLIQFKTSNSKNDHRHPARSFL 129
           V+  IQ  +N  T+ +  +NN  Q   S + N+H+   R+F+
Sbjct: 52  VAREIQSEMNRITQYMKQWNNQSQLLDSEAINEHQSTKRNFM 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,498,436
Number of Sequences: 27780
Number of extensions: 113675
Number of successful extensions: 261
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)