Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P04
         (363 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    24   0.48 
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    20   7.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   7.8  

>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 24.2 bits (50), Expect = 0.48
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +1

Query: 22  IQKNLNTKLIHNFNNLIQFK----TSNSKNDHRHPA 117
           +Q N+N +L      L+ F     + N  NDHR PA
Sbjct: 66  LQGNINNQLFQTPCELLNFPKRSFSENMINDHRQPA 101


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 208 VNRGHCKSIGVSNKKM 255
           ++RGHC  IG   K++
Sbjct: 41  LDRGHCDVIGKKIKEL 56


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -2

Query: 263 IKHIFLLETPMLLQWPRLTYIIWNYSHLCSDTG 165
           ++ +FL   P LL   R  Y    Y     D+G
Sbjct: 350 VRQVFLNWMPRLLMMRRTPYSTPEYDDTYMDSG 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,907
Number of Sequences: 438
Number of extensions: 1309
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)