Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P04
         (363 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02502.1 68418.m00184 expressed protein  8113.                      35   0.014
At5g09750.1 68418.m01129 basic helix-loop-helix (bHLH) family pr...    29   1.2  
At2g41080.1 68415.m05074 pentatricopeptide (PPR) repeat-containi...    27   4.9  
At5g07260.1 68418.m00828 homeobox protein-related contains weak ...    26   8.6  
At1g04390.1 68414.m00429 expressed protein                             26   8.6  

>At5g02502.1 68418.m00184 expressed protein  8113.
          Length = 35

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 98  MITDIQLAVFSNILGVSIFLLVILYHYINA 187
           M  D  L  F+N LG+ IF++VI YH++ A
Sbjct: 1   MFDDQDLGFFANFLGIFIFIMVIAYHFVVA 30


>At5g09750.1 68418.m01129 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 224

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 31  NLNTKLIHNF--NNLIQFKTSNSKNDHRH 111
           N+N  L  N+  NN+I    +N+KND  H
Sbjct: 5   NMNPSLFQNYTWNNIINSSNNNNKNDDHH 33


>At2g41080.1 68415.m05074 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 565

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 209 SIAAIVKALVSLIKKCALY*DVNKSFT 289
           S+ A+V +L+S+  KC    D  K+F+
Sbjct: 225 SVVAVVSSLISMYSKCGCLGDAAKAFS 251


>At5g07260.1 68418.m00828 homeobox protein-related contains weak
           similarity to Homeobox protein FWA (Swiss-Prot:Q9FVI6)
           [Arabidopsis thaliana]
          Length = 541

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 200 IWNYSHLCSDTG*LIRIWRLPKCWRKL 120
           IW+Y     D   LIRI R P  W ++
Sbjct: 404 IWSYLESAKDMKELIRIGRHPNSWNEV 430


>At1g04390.1 68414.m00429 expressed protein
          Length = 849

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 248 LLETPMLLQWPRLTYIIWN 192
           LL + ++L+WP+  Y +WN
Sbjct: 192 LLLSTIMLKWPQSRYSVWN 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,024,226
Number of Sequences: 28952
Number of extensions: 102369
Number of successful extensions: 200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)