Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P02
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   5.5  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   7.2  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   9.5  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   9.5  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.5  

>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 277 CTVCEKLMLAVVGLFCECCAVSACXKCYXTV 369
           C VC +L     GL CE C+     KC   V
Sbjct: 427 CAVCAELFSYSPGLQCENCSFVCHKKCVTKV 457


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +1

Query: 118 YYFVTGGLFLMYLAFRILYSLIV 186
           +YF+TGG+F++++     +  I+
Sbjct: 7   FYFITGGIFILWILAHSFFVKII 29


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +1

Query: 94  INYDSVTAYYFVTGGLFLMYLAFRILYSLIVQNNFMQTQYRAYGHTWRSIQCNKSI-PYN 270
           I YD + A YFV+  LF++   F  L+ + +    + + +    H+ ++ +  KS+  + 
Sbjct: 446 IMYDIMDAEYFVSCLLFIISAYFLTLWLMSLVIAVVTSSFIDLQHSGKNQKEQKSVDKHL 505

Query: 271 IYCTVCEKLM 300
           I   +CEK +
Sbjct: 506 IRNKLCEKYL 515


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 592 YCYIYGSHIAQFSNP*YYYTTLFFGTS 512
           YC   G  +  FSN  ++Y  LF+G S
Sbjct: 142 YCSFVGKDVC-FSNQKFFYQFLFYGFS 167


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 393 LFTFIXXIHCXVAFXACTNSTTLTKQSNYSQHKFLTNCTVYIIG 262
           LFT+   I       + T S    +QS  ++   LT+ TV+I G
Sbjct: 202 LFTYFISIFLLYVLFSSTKSIADIRQSYLARQNRLTDRTVFISG 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,657
Number of Sequences: 5004
Number of extensions: 49864
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)