Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P02
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539...    38   0.005
03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127...    33   0.26 
03_02_0915 + 12360079-12360095,12360225-12361353                       32   0.35 
03_02_0905 - 12292322-12293073,12293288-12293471                       29   2.4  
02_03_0217 + 16512689-16512838,16514353-16515444                       29   3.2  
02_04_0561 + 23879976-23879981,23880531-23882558,23882687-238827...    28   5.6  

>12_02_0870 -
           23852923-23853228,23853416-23853728,23853813-23853938,
           23854038-23854243,23854311-23854443,23854607-23854688,
           23854785-23854914,23855034-23855126,23855211-23855333,
           23855786-23855977,23858230-23858394,23858697-23858768,
           23858826-23858945,23859873-23859949,23860032-23860398,
           23860738-23861871
          Length = 1212

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 19/149 (12%)
 Frame = +1

Query: 217 AYGHTWRSIQCNKSIPYNIYCTVCEKLMLA---VVGLF--CECCAVSACXKCYXTVDXXY 381
           A  H WR    ++S    + C VC K + +   + G+   C+ C  +A   C        
Sbjct: 72  ASSHIWRKELGSRS--KGLKCCVCLKSVSSPQYMGGVIHQCDICGATAHPSCSGNAHKDC 129

Query: 382 KCKQLTWPSNKIFPHQWVDVGISRTDIAENND---HXDDX--------TXKYFCSWCQRI 528
           KC  +    + I  HQW    I  +D +E +    + D+         +  ++C WCQR+
Sbjct: 130 KCVSMVGFEHVI--HQWAVQWIDTSDRSEEDSFCCYCDESCNGAFLAGSPIWYCMWCQRL 187

Query: 529 KL--CNNTXDLKT-EQCDFHKYSNIIIPP 606
               C+N   ++T + CD      +I+ P
Sbjct: 188 VHVDCHNNLSIETGDICDLGPLKRLILSP 216


>03_05_0559 -
           25610474-25610951,25611149-25611890,25612355-25612744,
           25613041-25613099,25613186-25613326,25613449-25613545,
           25614999-25615185
          Length = 697

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 238 SIQCNKSIPYNIYCTVCEKLMLAVVGLFCECCAVSACXKC 357
           S+     +P  ++C +C K+M   V L  +CC  S C KC
Sbjct: 254 SVSVVDDLPAELHCRLCNKVMADAV-LTSKCCFDSFCDKC 292


>03_02_0915 + 12360079-12360095,12360225-12361353
          Length = 381

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 259 IPYNIYCTVCEKLMLAVVGLFCECCAVSACXKC 357
           IP  +YC +C  +M   V L  +CC  S C +C
Sbjct: 168 IPAELYCKICRNVMANAV-LASKCCFDSFCDRC 199


>03_02_0905 - 12292322-12293073,12293288-12293471
          Length = 311

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 259 IPYNIYCTVCEKLMLAVVGLFCECCAVSACXKC 357
           IP  +YC +C  +M   V +  +CC  S C  C
Sbjct: 82  IPAELYCKICRNVMADAV-VTSKCCFDSFCDGC 113


>02_03_0217 + 16512689-16512838,16514353-16515444
          Length = 413

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +1

Query: 424 HQWVDVGISRTDIAENNDHXDDXTXKYFCSWCQRIKLCNNTXDLKTEQCDFHKYSNIIIP 603
           H+ +D G+   D+   +            ++C   K+  NT ++K     FHKY N+++P
Sbjct: 102 HEAID-GVELPDVVAKSVQFGTTALDMTAAYCT--KIVQNTNNIKKHDI-FHKYCNVLLP 157


>02_04_0561 +
           23879976-23879981,23880531-23882558,23882687-23882722,
           23882826-23882939,23883158-23883226,23883311-23883445
          Length = 795

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 44  VYFFVKIQ*FEGKWNTLLIMTALQLITLLRVVY 142
           VY  + I  FEG WN L+    LQ    LR +Y
Sbjct: 350 VYDSLTIDEFEGNWNALITYNGLQGNDWLRSIY 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,497,048
Number of Sequences: 37544
Number of extensions: 251608
Number of successful extensions: 485
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)