Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P02
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42132| Best HMM Match : DAGK_cat (HMM E-Value=1.3e-35)              49   3e-06
SB_18382| Best HMM Match : Kinesin (HMM E-Value=2.3e-14)               29   2.5  
SB_50716| Best HMM Match : WD40 (HMM E-Value=0)                        28   7.6  

>SB_42132| Best HMM Match : DAGK_cat (HMM E-Value=1.3e-35)
          Length = 558

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
 Frame = +1

Query: 274 YCTVCEKLMLAVVGLFCECCAVSACXKCYXTVDXXYKCKQLTWPSNKIFPHQWVDVGI-- 447
           YC  CE  +  V GL CE C +S   +C  T +  + CK L         H ++   +  
Sbjct: 155 YCNACENAL--VRGLHCENCTLSVHDECLETANEVFTCKALVLSRRSSLKHHYIRGNLPL 212

Query: 448 -SRTDIAENNDHXDDXTXKYFCSWCQRIKLCNNTXDLKTEQCDFHKYSNIIIPP 606
            S   +               C WCQ  K+ ++    ++  CDF +Y  +I+PP
Sbjct: 213 CSYCSVCGCLCGTAPRLCDQRCIWCQE-KVHDDCLRNQSMICDFGRYRTLILPP 265


>SB_18382| Best HMM Match : Kinesin (HMM E-Value=2.3e-14)
          Length = 278

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 214 RAYGHTWRSIQCNKSIPYNIYCTVCEKLM 300
           R  GH + S+   KS+ Y++Y   CE L+
Sbjct: 31  RGTGHIFNSVYSQKSLTYDVYKDCCEPLV 59


>SB_50716| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 494

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 160 FRILYSLIVQN-NFMQTQYRAYGHTWRSIQCNKSIPYNIYC 279
           FR LY  I+Q+   ++T +R   H    I C       +YC
Sbjct: 155 FRKLYPKIIQDLETIETNWRCGNHALHKIPCRSENSKGVYC 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,944,231
Number of Sequences: 59808
Number of extensions: 341301
Number of successful extensions: 819
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)