Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P02
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   2.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.0  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = +1

Query: 127 VTGGLFLMYLAFRILYSL--IVQNNFMQTQYRAYGHTWRSIQCNKSIPYNIYCTVCEKLM 300
           + GG  L +L F  +Y +    +N    T +      W    CN +I   IY    +   
Sbjct: 14  IVGGFILCWLPFFTMYLVRAFCRNCIHPTVFSVL--FWLGY-CNSAINPCIYALFSKDFR 70

Query: 301 LAVVGLFCEC 330
            A   + C+C
Sbjct: 71  FAFKSIICKC 80


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = +1

Query: 127 VTGGLFLMYLAFRILYSL--IVQNNFMQTQYRAYGHTWRSIQCNKSIPYNIYCTVCEKLM 300
           + GG  L +L F  +Y +    +N    T +      W    CN +I   IY    +   
Sbjct: 462 IVGGFILCWLPFFTMYLVRAFCRNCIHPTVFSVL--FWLGY-CNSAINPCIYALFSKDFR 518

Query: 301 LAVVGLFCEC 330
            A   + C+C
Sbjct: 519 FAFKSIICKC 528


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 123 VISCNAVIINKVFHFPSNYCIFTK 52
           V+SC A I+N        +C  TK
Sbjct: 122 VLSCTASILNLCMISVDRFCAITK 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,804
Number of Sequences: 438
Number of extensions: 3429
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)