Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_P02
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67220.1 68414.m07651 zinc finger protein-related similar to ...    30   1.2  
At2g28130.1 68415.m03417 expressed protein                             29   2.7  

>At1g67220.1 68414.m07651 zinc finger protein-related similar to
            SP|Q09472 E1A-associated protein p300 {Homo sapiens},
            SP|Q92793 CREB-binding protein {Homo sapiens}; contains
            Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
            PHD-finger, PF02135: TAZ zinc finger
          Length = 1357

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 259  IPYNIYCTVCEKLMLAVVGLFCECCA-VSACXKCY 360
            +  N  CT C K +L+ +  FCE C  +  C  CY
Sbjct: 1093 VELNYSCTRCSKAVLSGLRWFCEKCKNLHLCESCY 1127


>At2g28130.1 68415.m03417 expressed protein
          Length = 458

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 499 KYFCSWCQRIKLCNNTXDLKTEQCDF 576
           K+ C W   I L ++  DL++  CDF
Sbjct: 164 KFICKWTLNILLYSSKEDLRSSACDF 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,514,980
Number of Sequences: 28952
Number of extensions: 233290
Number of successful extensions: 488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)