Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O24
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   2.3  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   4.1  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   4.1  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   4.1  
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    25   9.5  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/51 (21%), Positives = 23/51 (45%)
 Frame = +3

Query: 342  PVXYNIGVVNTPAEVIKQFCNESFIXRYDVVLDEQWMNVLWSSVVSIFIVG 494
            P+     +VN P    K + N   +  +D +LD +  +    S+ +++  G
Sbjct: 1332 PIPERAPLVNDPVNYSKNWWNVKILEHFDFILDTEAASTFPKSITAVYSWG 1382


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = +3

Query: 270 EYTATGWSFYLILAGVITTIGSSVPVXYNIGVVNTPAEVIKQFCNESFIXRYDVVLDEQW 449
           +Y+   WSF ++ A +I    +      N   +   A+V+      +++ +Y +VLD Q+
Sbjct: 214 DYSLDIWSFGVMFAALIFKKDTFFRGRDNYDQLVKIAKVLGTDELFAYVQKYQIVLDRQY 273

Query: 450 MNVL 461
            N+L
Sbjct: 274 DNIL 277


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = +3

Query: 165 EQLVLPCLAENRRRESFQYVPQPVFNENXHWTXTNEYTATGWSFYLILAGVITTIGS 335
           + L +  L EN RR +  Y+  PVFN     T    Y     S  L LA  +T +GS
Sbjct: 517 DNLSICSLPENFRRTTL-YLQHPVFNRYHSETELMRYIHHLQSKDLSLAHAMTPLGS 572


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +3

Query: 357 IGVVNTPAEVIKQFCNESFIXRYDVVLDEQWMNVLWSSVV-SIFIVGGCTGSILGSYLAD 533
           +  V T  EV   + + + I  +D+       ++  S +V S+FIVG   G +L   ++D
Sbjct: 91  VATVYTFLEVYVIWSSTACINFFDIYQTNWHCSIQVSYLVQSLFIVGNAFGPMLLGPMSD 150

Query: 534 SLGXKMATIATGALWI 581
             G K   + +  L+I
Sbjct: 151 IFGRKWVYVGSLILYI 166


>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 204 RESFQYVPQPVFNENXHWTXTNEYTATGWSFYLILAGVITT 326
           +E+F+    P+F     +  T+ + +  W  + I+ GVI+T
Sbjct: 41  QEAFKLAKNPLFPSYPRFENTSNFVSRDWRDWFIM-GVIST 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,377
Number of Sequences: 5004
Number of extensions: 51677
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)