SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O24
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0005 + 13612060-13612291,13612381-13612510,13612726-136129...    36   0.021
03_06_0498 - 34341441-34341575,34341808-34341945,34342019-343421...    36   0.028
01_01_0216 + 1843413-1843509,1844583-1844694,1844841-1844908,184...    33   0.26 
10_08_1053 - 22575281-22575409,22575516-22575653,22575786-225758...    31   1.1  
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133...    30   1.4  
09_06_0274 + 21967740-21968230,21968411-21968550,21968711-219689...    29   2.4  
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    29   2.4  
01_06_0284 + 28174126-28174247,28174380-28174407,28174729-28174935     29   3.2  
07_01_1118 - 10316298-10316710,10316789-10317264,10317397-103177...    29   4.2  
04_04_0079 + 22586803-22586923,22592541-22592860,22592991-225936...    29   4.2  
04_04_0087 + 22718930-22719068,22719165-22719484,22721406-22722500     28   5.6  
12_02_0496 + 19704429-19704613,19705874-19706736,19706764-197069...    27   9.8  
04_04_0593 - 26480036-26481438,26481915-26482083                       27   9.8  
02_05_0432 + 28936293-28936796,28937382-28939250                       27   9.8  

>09_04_0005 +
           13612060-13612291,13612381-13612510,13612726-13612926,
           13613086-13613185,13613513-13613559,13613871-13613964,
           13614042-13614192,13614777-13614923,13614994-13615067,
           13615288-13615376,13615840-13615954,13616104-13616301
          Length = 525

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 39/121 (32%), Positives = 52/121 (42%)
 Frame = +3

Query: 285 GWSFYLILAGVITTIGSSVPVXYNIGVVNTPAEVIKQFCNESFIXRYDVVLDEQWMNVLW 464
           GW    +   V+T   ++    Y+IGV+N P E I +             L  Q    L 
Sbjct: 98  GW--LRVFPHVLTASMANFLFGYHIGVMNGPIEDIAR------------ELGFQGNPFLQ 143

Query: 465 SSVVSIFIVGGCTGSILGSYLADSLGXKMATIATGALWIAGALLFLLCRTANSXXMLIIG 644
             VVSIFIVG   GS+  S L D+ G K          I GA   LL   A+S   +++G
Sbjct: 144 GLVVSIFIVGAFFGSLGSSALVDNFGCKRTLQIDSIPLILGA---LLSAQADSLDEMLLG 200

Query: 645 R 647
           R
Sbjct: 201 R 201


>03_06_0498 -
           34341441-34341575,34341808-34341945,34342019-34342117,
           34342320-34342400,34342548-34342610,34342717-34342764,
           34343033-34343410,34345413-34345537,34345635-34345701,
           34345797-34345856,34346495-34346621,34346670-34346986
          Length = 545

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 23/60 (38%), Positives = 33/60 (55%)
 Frame = +3

Query: 471 VVSIFIVGGCTGSILGSYLADSLGXKMATIATGALWIAGALLFLLCRTANSXXMLIIGRL 650
           V S  + G   GS+L   +AD LG ++  +   AL+I+GA   L+   A    +LIIGRL
Sbjct: 168 VASGSLYGALGGSLLAYRVADFLGRRIELVTAAALYISGA---LVTGFAPDFVLLIIGRL 224


>01_01_0216 +
           1843413-1843509,1844583-1844694,1844841-1844908,
           1845165-1845297,1845404-1845503,1845562-1845722,
           1846095-1846188,1846273-1846426,1846597-1846743,
           1846819-1846892,1846985-1847073,1847161-1847275,
           1847569-1847751
          Length = 508

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 24/65 (36%), Positives = 27/65 (41%)
 Frame = +3

Query: 456 VLWSSVVSIFIVGGCTGSILGSYLADSLGXKMATIATGALWIAGALLFLLCRTANSXXML 635
           VL   VVS  + G   GS  G  LAD  G     I        GA    L  TA+    +
Sbjct: 90  VLQGWVVSTTLAGATAGSFTGGALADKFGRTRTFILDAIPLAVGA---FLSATAHDVRTM 146

Query: 636 IIGRL 650
           IIGRL
Sbjct: 147 IIGRL 151


>10_08_1053 -
           22575281-22575409,22575516-22575653,22575786-22575884,
           22576281-22576361,22577171-22577233,22577473-22577520,
           22577622-22577990,22578082-22578183,22578290-22578414,
           22578500-22578566,22578817-22578895,22578928-22579079,
           22579182-22579223
          Length = 497

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +3

Query: 474 VSIFIVGGCTGSILGSYLADSLGXKMATIATGALWIAGALLFLLCRTANSXXMLIIGR 647
           VS  + G   GSIL   +AD LG +   I +   ++ GA   LL   A +  ++++GR
Sbjct: 92  VSGSLYGALIGSILAFNIADFLGRRRELILSSVSYLIGA---LLTAAAPNFPIMVVGR 146


>05_05_0059 +
           22011168-22011662,22012668-22012894,22013029-22013377,
           22013464-22013508,22013589-22013735,22013851-22013988,
           22014126-22014159,22014258-22014430
          Length = 535

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = +3

Query: 447 WMNVLWSSVVSIFIVGGCTGSILGSYLADSLGXKMATIATGALWIAGALLFLLCRTANSX 626
           W +     V S F+ G    S++G  LAD  G K       ALW     L     + ++ 
Sbjct: 156 WSSSFLGIVQSSFLWGYVFSSMVGGALADRYGGKKVMAGAAALWSLATFLTPWAASQSTI 215

Query: 627 XMLIIGRL 650
            +L I  L
Sbjct: 216 MLLAIRAL 223


>09_06_0274 +
           21967740-21968230,21968411-21968550,21968711-21968905,
           21969524-21969652,21970063-21970218,21970507-21970589,
           21972229-21972433,21972601-21972805,21973059-21973194,
           21973990-21974164,21974470-21974528,21974642-21974716,
           21974804-21974920,21975010-21975080,21975170-21975473,
           21975721-21976086,21976404-21976514
          Length = 1005

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 421 RXMKLSLQNCFITSAGVLTTPILYXTGT 338
           R + L L+ CF TS     TP LY +GT
Sbjct: 3   RRLLLPLRRCFSTSTSSSATPTLYSSGT 30


>01_03_0117 +
           12684729-12685886,12685978-12686145,12686292-12686336,
           12686438-12687280
          Length = 737

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 643 PIISXSXELAVRHSKKSKAPAIHNA--PVAIVAIFXPRLSAKYEPSIEPVHPP 491
           P+ S S E   RHS  SK PA   A  P A+     P    K  PS+ PV PP
Sbjct: 201 PVPSPSPEHPPRHSP-SKPPAYAPAKPPTALRPAIPPAAMPK-PPSVAPVQPP 251


>01_06_0284 + 28174126-28174247,28174380-28174407,28174729-28174935
          Length = 118

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 498 CTGSILGSYLADSLGXKMATIATGALWIAGA 590
           CT  ++G  LA S+G   A  A G LWI G+
Sbjct: 82  CTRFLVGFVLAVSVGFLSAVKALGMLWILGS 112


>07_01_1118 -
           10316298-10316710,10316789-10317264,10317397-10317735,
           10317798-10317895,10319007-10319045
          Length = 454

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 414 IXRYDVVLDEQWMNVLWSSVVSIFIVGGCTGSIL 515
           + RY +V+D  W    W +++S  +   C+G I+
Sbjct: 44  LQRYLIVIDNVWSISAWEAILSRLLDNKCSGRII 77


>04_04_0079 +
           22586803-22586923,22592541-22592860,22592991-22593623,
           22593717-22594166
          Length = 507

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +3

Query: 453 NVLWSSVVSIFIVGGCTGSILGSYLADSLGXKMATIATGALWIAGALLFLLCRTANSXXM 632
           N + ++  S   + G   S++ S +   +G +   +  GAL++AG+        A +  M
Sbjct: 74  NQVLTAFTSSLYIAGAVASLVASRVTRMVGRQAIMLTGGALFLAGS---AFNAGAVNIAM 130

Query: 633 LIIGRL 650
           LIIGR+
Sbjct: 131 LIIGRI 136


>04_04_0087 + 22718930-22719068,22719165-22719484,22721406-22722500
          Length = 517

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/66 (28%), Positives = 35/66 (53%)
 Frame = +3

Query: 453 NVLWSSVVSIFIVGGCTGSILGSYLADSLGXKMATIATGALWIAGALLFLLCRTANSXXM 632
           +VL +   S+++ G    S+    +  ++G +   +A GAL+ AGA    +   A +  M
Sbjct: 81  HVLTAFTSSLYLAG-LAASLAAGRVTRAVGRQAVMLAGGALFFAGA---AVNAAAVNIAM 136

Query: 633 LIIGRL 650
           LI+GR+
Sbjct: 137 LIVGRM 142


>12_02_0496 +
           19704429-19704613,19705874-19706736,19706764-19706951,
           19707190-19708200
          Length = 748

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +3

Query: 336 SVPVXYNIGVVNTPAEVIKQFCNESFIXRYDVVLDEQWMNVLWSSVVSIF 485
           S+ +  N+ +    AE+           RY +VLD+ W    W  +V  F
Sbjct: 171 SIQIGANLDLSRDVAEIKHHMFTFLLDKRYLIVLDDVWREETWHELVDAF 220


>04_04_0593 - 26480036-26481438,26481915-26482083
          Length = 523

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 471 VVSIFIVGGCTGSILGSYLADSLGXKMATIATGAL-WIAGALLFLLCRTANSXXMLIIGR 647
           +V    V    GS+ G   +D++G K  T+A GA+ + AGA +      A S  +L+IGR
Sbjct: 82  LVGCLSVVSLLGSLSGGRTSDAIGRKW-TMALGAIVFQAGAAIMTF---APSFTVLMIGR 137

Query: 648 L 650
           L
Sbjct: 138 L 138


>02_05_0432 + 28936293-28936796,28937382-28939250
          Length = 790

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 385 TSAGVLTTPILYXTGTDDPMVVMTPANIK*NDHPVAVYSFVLVQXWFSLNTGCGT 221
           T   +L     + T  D   V +    I+ ND    VYS+++ Q WF  N    T
Sbjct: 133 TFTRILNAQRKWITQDDATYVAVHCLRIRNNDAAFRVYSWMVRQHWFRFNFALAT 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,075,296
Number of Sequences: 37544
Number of extensions: 345521
Number of successful extensions: 855
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -