Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O24
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16059| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_759| Best HMM Match : No HMM Matches (HMM E-Value=.)                36   0.029
SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0)                     36   0.038
SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)                  34   0.087
SB_14968| Best HMM Match : IL3 (HMM E-Value=8.6)                       29   3.3  
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_38759| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_225| Best HMM Match : DSPc (HMM E-Value=8.6e-05)                    28   5.7  

>SB_16059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +3

Query: 288 WSFYLILAGVITTIGSSVPVXYNIGVVNTPAEVIKQFCNESF--IXRYDVVLDEQWMNVL 461
           W+ +LI A  +  +GSS    YN   +N+P E IK++       +  YD           
Sbjct: 20  WTGWLIYATAVAVLGSSFQFGYNSACINSPVEDIKKYFKTQHKPLATYD----------- 68

Query: 462 WSSVVSIFIVGGCTGSILGSYLADSLG 542
           WS +V IF  GG  G+++G  L++ +G
Sbjct: 69  WSIIVGIFPFGGMLGALVGPTLSNIIG 95


>SB_759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = -2

Query: 616  AVRHSKKSKAPAIHNAPV-AIVAIFXPRLSAKYEPSIEPVHPPTMKIDTTEDQRTFIHCS 440
            +VRH KKS+  A     V A+V +   + ++K    +E +HP  + +D  E +   I CS
Sbjct: 934  SVRHRKKSEVIADDEKQVGAVVLVTESKETSKQTRCLESLHPRLL-VDGAETKVNLIKCS 992

Query: 439  SSTTS 425
            SS++S
Sbjct: 993  SSSSS 997


>SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 493

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 22/72 (30%), Positives = 37/72 (51%)
 Frame = +3

Query: 435 LDEQWMNVLWSSVVSIFIVGGCTGSILGSYLADSLGXKMATIATGALWIAGALLFLLCRT 614
           L + W  ++ S  +   IVG    ++LG  L DSLG K   +    ++ AGA++      
Sbjct: 84  LSDFWHELIVSGTIGTAIVG----AVLGGILNDSLGRKPVLVLCSGVFTAGAVVM---GV 136

Query: 615 ANSXXMLIIGRL 650
           A +  +L++GRL
Sbjct: 137 AGTKHVLLVGRL 148


>SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)
          Length = 201

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 504 GSILGSYLADSLGXKMATIATGALWIAGALLFLLCRTANSXXMLIIGR 647
           G++ G   A+  G K + +A   L I GALL  L   A +  +L +GR
Sbjct: 3   GALAGPLFANRFGRKRSLLANNGLAIVGALLMFLSYFAKTSPLLTVGR 50


>SB_14968| Best HMM Match : IL3 (HMM E-Value=8.6)
          Length = 321

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 116 SEI-WLGLECRSRAYRCLQVKINRNFTPCLSFN 21
           SE+ W+G  C +R   C +V+I R   PC+ +N
Sbjct: 26  SEVRWIG-HCSTRPIFCSRVRIRRQKCPCMYYN 57


>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1332

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 116 SEI-WLGLECRSRAYRCLQVKINRNFTPCLSFN 21
           SE+ W+G  C +R   C +V+I R   PC+ +N
Sbjct: 26  SEVRWIG-HCSTRPIFCSRVRIRRQKCPCMYYN 57


>SB_38759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 486 IVGGCTGSILGSYLADSLG 542
           IVGGC GS+LG  +  +LG
Sbjct: 319 IVGGCVGSLLGHVIGTTLG 337


>SB_225| Best HMM Match : DSPc (HMM E-Value=8.6e-05)
          Length = 881

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 432 VLDEQWMNVLWSSVVSIFIVGGCTGSILGSYLADSLGXKM-ATIATGALWIAGALLFLLC 608
           V +E +     +S+V I  VG   G  LG ++ADSLG  + A    G+  I  +L+    
Sbjct: 378 VREEAYPKATGASLV-IMSVGVAGGPPLGGFIADSLGSYIPAFYVAGSFNILASLVLFFA 436

Query: 609 RTANS 623
            T+ S
Sbjct: 437 ITSRS 441


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,715,998
Number of Sequences: 59808
Number of extensions: 390321
Number of successful extensions: 968
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)