Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O24
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   2.6  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   7.8  

>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 515 KYRAGTPADDEDRHHRRPKNIHPLLVQHYI 426
           KYR  +     DR  R     H ++  HYI
Sbjct: 291 KYRETSKERSRDRRERGRSREHRIIPSHYI 320


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 613 VRHSKKSKAPAIHNAPVAIVAIFXPRLSAKYEPSIEP 503
           +R   +S+A   +N PV I     P    + EP  EP
Sbjct: 88  LRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEP 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,402
Number of Sequences: 438
Number of extensions: 3816
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)