Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_O23
(651 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 304 1e-81
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 281 1e-74
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 241 1e-62
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 218 8e-56
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 202 4e-51
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 137 2e-31
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 91 3e-17
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 91 3e-17
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 89 6e-17
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 85 2e-15
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 79 7e-14
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 76 6e-13
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 75 1e-12
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 74 3e-12
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 73 5e-12
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 69 1e-10
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 67 3e-10
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 66 9e-10
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 64 2e-09
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 64 4e-09
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 62 1e-08
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 60 3e-08
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 60 5e-08
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 58 1e-07
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.052
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 36 1.1
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 2.6
UniRef50_A4BRH6 Cluster: Amino acid adenylation; n=1; Nitrococcu... 34 3.4
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 33 5.9
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 304 bits (747), Expect = 1e-81
Identities = 132/206 (64%), Positives = 162/206 (78%)
Frame = +2
Query: 32 VAQKIFTHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 211
++ + F+ P HGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 212 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYK 391
DRPGSK+NKKE+VEAVTI+ETPPMV VG+VGY+ TP GLR TV+AEH+S++C+RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 392 NWYXXXXXXXXXXXXXWQDELGRKSIXKDFKXMIRYCXVVRVIAHTQMXLLKQRQKXAHI 571
NW+ WQDE G+K + KDF M +YC V+RVIAHTQM LL RQK AH+
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 572 MEIQLNGGTIXDKXKWATXHLEKPIP 649
MEIQ+NGGT+ +K WA LE+ +P
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVP 206
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 281 bits (688), Expect = 1e-74
Identities = 123/206 (59%), Positives = 154/206 (74%)
Frame = +2
Query: 32 VAQKIFTHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 211
++ + F+ P HG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 212 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYK 391
RPG KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AEH+S++CRRRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 392 NWYXXXXXXXXXXXXXWQDELGRKSIXKDFKXMIRYCXVVRVIAHTQMXLLKQRQKXAHI 571
+W+ W+D G+K + KDF M +YC V+RVI HTQM LL RQK AHI
Sbjct: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
Query: 572 MEIQLNGGTIXDKXKWATXHLEKPIP 649
MEIQLNGGT+ +K WA LEK +P
Sbjct: 181 MEIQLNGGTVAEKVAWAQARLEKQVP 206
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 241 bits (589), Expect = 1e-62
Identities = 104/168 (61%), Positives = 127/168 (75%)
Frame = +2
Query: 32 VAQKIFTHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 211
++ + F+ P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 212 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYK 391
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY+ TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 392 NWYXXXXXXXXXXXXXWQDELGRKSIXKDFKXMIRYCXVVRVIAHTQM 535
NW WQDE G+K I DF + +YC +RVIAHTQM
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 218 bits (533), Expect = 8e-56
Identities = 102/203 (50%), Positives = 134/203 (66%), Gaps = 3/203 (1%)
Frame = +2
Query: 47 FTHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 226
F HP HG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR+ DRPGS
Sbjct: 57 FEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVDRPGS 116
Query: 227 KINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 406
K+NKKE+VE VTI+E PPMV VG+VGY TP G + + TVWA H S + RRRFYKNW
Sbjct: 117 KVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKNWKQS 176
Query: 407 XXXXXXXXXXXWQDELGRKSIXKDFKXMIRYCXVVRVIAHTQMXLLKQRQ---KXAHIME 577
+ GR + + K + ++RV+AHTQ+ L+ + K AH+ E
Sbjct: 177 AQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVVAHTQLRKLRNNRVGVKKAHVSE 236
Query: 578 IQLNGGTIXDKXKWATXHLEKPI 646
IQ+NGGTI K + A LEK +
Sbjct: 237 IQINGGTIAQKIELAKSLLEKEV 259
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 202 bits (494), Expect = 4e-51
Identities = 93/182 (51%), Positives = 124/182 (68%)
Frame = +2
Query: 47 FTHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 226
F+ P HGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++ DRP S
Sbjct: 6 FSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKVDRPES 65
Query: 227 KINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 406
K+NKKE+VE V I+ETPPMV +G+VGYI P GL V+AEH+S ++ FYKNW+
Sbjct: 66 KMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYKNWHSE 125
Query: 407 XXXXXXXXXXXWQDELGRKSIXKDFKXMIRYCXVVRVIAHTQMXLLKQRQKXAHIMEIQL 586
++G++ + +FK M +YC V+ ++AHTQM LL QK AH+MEIQ+
Sbjct: 126 KKASTKYF------DMGKRQLEMEFKSMKKYCQVICIVAHTQMCLLSLHQKKAHLMEIQV 179
Query: 587 NG 592
G
Sbjct: 180 MG 181
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 137 bits (331), Expect = 2e-31
Identities = 80/187 (42%), Positives = 107/187 (57%)
Frame = +2
Query: 89 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 268
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 269 ETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQD 448
ET P + VG VG T GL+ +V+A+H+S +C+R K Y W+
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKRTGIK--YKTNTSPNTKARSSWR- 117
Query: 449 ELGRKSIXKDFKXMIRYCXVVRVIAHTQMXLLKQRQKXAHIMEIQLNGGTIXDKXKWATX 628
G ++ TQM LL QK AH+ E Q+N G + K WA
Sbjct: 118 --GTSAL-------------------TQMCLLPLCQKKAHLTESQVNRGPVA-KLDWAHK 155
Query: 629 HLEKPIP 649
LE+ +P
Sbjct: 156 KLEQQVP 162
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 90.6 bits (215), Expect = 3e-17
Identities = 63/200 (31%), Positives = 96/200 (48%), Gaps = 7/200 (3%)
Frame = +2
Query: 56 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMS--EDCRRRFYKNWYXXX 409
+EI +AVT++E PPM + V GY TP+G++ +WA+ S + RF
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSSGPDGLMPRFANQTRGDR 125
Query: 410 XXXXXX--XXXXWQDELGRKSIXKDFKXMIRYCXV--VRVIAHTQMXLLKQ-RQKXAHIM 574
+ + + D + + VR+I TQ L+K K IM
Sbjct: 126 DIEEGRKPAKRAGRIPVREGGMNGDALAALTDSNLCEVRLIVATQPALVKSVPSKTPVIM 185
Query: 575 EIQLNGGTIXDKXKWATXHL 634
E+ L GG K +WA L
Sbjct: 186 EVGLVGGDTGAKLEWAHERL 205
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 90.6 bits (215), Expect = 3e-17
Identities = 45/99 (45%), Positives = 61/99 (61%)
Frame = +2
Query: 56 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWA 352
E+ +AVT++E PPM + V GY TP+G + WA
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA 104
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 89.4 bits (212), Expect = 6e-17
Identities = 52/111 (46%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
Frame = +2
Query: 56 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV DRPG +
Sbjct: 9 PRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTS 67
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIXTPH-GLRALLTVWAEHMSE-DCRRR 382
KEI VTI+ETPPM V Y P+ G +L WA+ E + +RR
Sbjct: 68 GKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRR 118
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 84.6 bits (200), Expect = 2e-15
Identities = 45/108 (41%), Positives = 57/108 (52%)
Frame = +2
Query: 56 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRR 379
E VT++ETPPM V Y TP+G + L VWA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDR 112
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 79.4 bits (187), Expect = 7e-14
Identities = 38/100 (38%), Positives = 55/100 (55%)
Frame = +2
Query: 56 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAE 355
+EI VTI++ PPM + Y TP G R + WAE
Sbjct: 69 GEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAE 108
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 76.2 bits (179), Expect = 6e-13
Identities = 60/207 (28%), Positives = 96/207 (46%), Gaps = 10/207 (4%)
Frame = +2
Query: 56 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ D PG N
Sbjct: 7 PRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG-LTN 62
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSED---CRRRFYK----- 391
KEI VTIIETPP+ G+ Y GL V D + R K
Sbjct: 63 GKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKPKPKM 122
Query: 392 NWYXXXXXXXXXXXXXWQDELGRKSIXKDFKXMIRYCXV--VRVIAHTQMXLLKQRQKXA 565
+Y + E+ + + + + MI+ + VR I TQ ++K ++K
Sbjct: 123 TFYKLLERRIATLPKNYTQEMFEQKLGQ-LEDMIKEGEIVDVRAIVATQPWVIKLKKK-P 180
Query: 566 HIMEIQLNGGTIXDKXKWATXHLEKPI 646
+ME + G ++ +K + L K +
Sbjct: 181 EVMEYAIGGTSVEEKFNYIKEKLGKEL 207
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 74.9 bits (176), Expect = 1e-12
Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Frame = +2
Query: 56 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+ DR
Sbjct: 9 PRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMIDDREHVDTA 65
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIXTPH-GLRALLTVW 349
+EI VT+IETPPMV +G Y P+ G AL VW
Sbjct: 66 GQEIFVPVTVIETPPMVVLGARVYGYDPNRGRYALTEVW 104
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 74.1 bits (174), Expect = 3e-12
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 1/198 (0%)
Frame = +2
Query: 56 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GS+ F P+KR++R +++++P++D V L AF YKAGM+H + D P S
Sbjct: 8 PRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKSPNA 64
Query: 236 KKEIVEAVTIIETPPM-VCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXX 412
+E+ +TI+E PP+ VC V + L L VWA+++ ++ R+
Sbjct: 65 GQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI--------- 115
Query: 413 XXXXXXXXXWQDELGRKSIXKDFKXMIRYCXVVRVIAHTQMXLLKQRQKXAHIMEIQLNG 592
+ RK++ +D + + VRV+ HT L +K I+EI++ G
Sbjct: 116 --------KLPKKEDRKTV-EDLEALKDKIEDVRVLVHTNPKLTCLPKKKPEILEIRIGG 166
Query: 593 GTIXDKXKWATXHLEKPI 646
I ++ +A L K +
Sbjct: 167 KDIEERLNYAKEILGKQL 184
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 73.3 bits (172), Expect = 5e-12
Identities = 39/110 (35%), Positives = 56/110 (50%)
Frame = +2
Query: 56 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRF 385
+E A T+IE PP+ V V Y TP+G + L VWA+ + +D R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF 112
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 68.5 bits (160), Expect = 1e-10
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Frame = +2
Query: 56 PAHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGSK 229
P GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S
Sbjct: 7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHSA 62
Query: 230 INKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVW 349
EI VTI+E P M G+ Y +P+G + + W
Sbjct: 63 TEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAW 102
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 67.3 bits (157), Expect = 3e-10
Identities = 57/202 (28%), Positives = 85/202 (42%), Gaps = 5/202 (2%)
Frame = +2
Query: 56 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GS G P+KRS + +P+ + P L F+GYK GMTHV D P S N
Sbjct: 9 PRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDWPNSPTN 67
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLT-VWAEHMSE--DCRRRFYKNWYXX 406
KEI VT++E PP++ + + Y G ++T W+ + D RR +
Sbjct: 68 GKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRRIHS---IS 124
Query: 407 XXXXXXXXXXXWQDELGRK-SIXKDFKXMIRYCXVVRVIAHTQMXLLKQRQKXA-HIMEI 580
+ + K + K I Y R++ TQ + K A ++EI
Sbjct: 125 SFLKDDESKKKFDERFNTKLDLIKSNLDRIVY---FRLLVSTQPRKIPSLGKKAPDLVEI 181
Query: 581 QLNGGTIXDKXKWATXHLEKPI 646
Q+ GG + +A L K I
Sbjct: 182 QIGGGEKKSQLDYALNILGKEI 203
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 65.7 bits (153), Expect = 9e-10
Identities = 33/100 (33%), Positives = 55/100 (55%)
Frame = +2
Query: 56 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GS+ + P+ R++ +++A+PK D +P + A G+KAG +V DR
Sbjct: 9 PRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDREKVPNA 67
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAE 355
K++V T++ TPP++ +G+ GY GL A V+AE
Sbjct: 68 GKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAE 107
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 64.5 bits (150), Expect = 2e-09
Identities = 41/105 (39%), Positives = 52/105 (49%)
Frame = -3
Query: 649 RDRFLQMXCGPFXFVXDGTTVKLDFHNVSXLLSLF*QXHLSVGNDSYNXTVADHXLEIFX 470
R+ F ++ GP FV DGTTV LDF VS LL + L V DS N +V +
Sbjct: 71 RNFFFKVFFGPVNFVGDGTTVDLDFSQVSFLLRQWSLLDLGVSQDSDNRSVLLDSGQFSF 130
Query: 469 Y*FASKLILPFXXGFSESLLLAFVPVFVEATSTVFRHMLRPDSQQ 335
F + F F E LL F+PV VE++S F + PDS Q
Sbjct: 131 NLFGVSGV--FTRVFGEGFLLGFIPVLVESSSDFFTQVFSPDSGQ 173
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 63.7 bits (148), Expect = 4e-09
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 19/120 (15%)
Frame = +2
Query: 47 FTHPAHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVHLTAFI 172
++ P HGS+G P+KR+ + +++++P K KPV L ++
Sbjct: 6 YSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-LLGYV 64
Query: 173 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIXTP-HGLRALLTVW 349
YKAGM+H + DRP + + KEI VT+++ PP++ +G+ GY P HGL + VW
Sbjct: 65 AYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSFGEVW 124
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 62.1 bits (144), Expect = 1e-08
Identities = 34/112 (30%), Positives = 58/112 (51%)
Frame = +2
Query: 56 PAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 235
P GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + IN
Sbjct: 9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNIN 58
Query: 236 KKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYK 391
+ + VT++E P ++ +G Y L+ + +++ + + R+ K
Sbjct: 59 GERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK 110
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 60.5 bits (140), Expect = 3e-08
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Frame = +2
Query: 53 HPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 232
H GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 6 HSRRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVT 63
Query: 233 NKKEIVEAVTIIETPPMVCVGVVGYIXTPHG-LRALLTVWAEHMSED 370
+ I VT+IE PP+ +G+ Y G + + W +++ ++
Sbjct: 64 AGQPIFVPVTVIEVPPLDVIGIRLYDEDEEGNMVVVYEKWTQNLDKE 110
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 60.1 bits (139), Expect = 5e-08
Identities = 34/105 (32%), Positives = 54/105 (51%)
Frame = +2
Query: 32 VAQKIFTHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 211
++ + F HP GS+GF PKKRS R K + + +++ F K THV+R
Sbjct: 1 MSHRKFEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRIC 60
Query: 212 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTV 346
+ SK + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 61 NIVSSKSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 58.4 bits (135), Expect = 1e-07
Identities = 31/108 (28%), Positives = 56/108 (51%)
Frame = +2
Query: 47 FTHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 226
F+ P GS+ + P+ R+R +++ +P+ +P L A G+KAG +V DR +
Sbjct: 6 FSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSIDDREHT 63
Query: 227 KINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSED 370
K++V T++ TPP+ +G+ GY +G V+AE + +
Sbjct: 64 PNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPRE 111
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.052
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 104 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 241
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.5 bits (78), Expect = 1.1
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 238 ERDRGGCHHHRDSSDGLCRCCWIH*XPSWTTRSVD 342
E DRG CHH+ S GLCR C + P+ T V+
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAATGFEVE 70
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 34.3 bits (75), Expect = 2.6
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 89 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 262
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 263 IIETPPMVCVGVVG 304
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_A4BRH6 Cluster: Amino acid adenylation; n=1; Nitrococcus
mobilis Nb-231|Rep: Amino acid adenylation - Nitrococcus
mobilis Nb-231
Length = 1076
Score = 33.9 bits (74), Expect = 3.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 25 PACRTENFHAPRSWVYGILSQKEVPSSSW*GQGVPERRP*QTCS 156
P CR N + P G+++ P +W G +P +P CS
Sbjct: 735 PDCRIHNHYGPTETTVGVMAHTFDPQDAWCGDALPLSQPLANCS 778
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 33.1 bits (72), Expect = 5.9
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -3
Query: 283 HRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITDKSSQMNRFARVV 134
HRR + ++ D+ LVD T++ VG GLITD +S ++ A V
Sbjct: 475 HRRDVTAARAIADMILVDERDATMQVQAEVGGQGLITDIASTVSAVAGAV 524
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,718,532
Number of Sequences: 1657284
Number of extensions: 12212313
Number of successful extensions: 27132
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 26390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27105
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -