BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_O23 (651 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 264 6e-72 SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 264 8e-72 SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 27 2.3 SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 26 4.1 >SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Schizosaccharomyces pombe|chr 1|||Manual Length = 388 Score = 264 bits (648), Expect = 6e-72 Identities = 119/200 (59%), Positives = 151/200 (75%) Frame = +2 Query: 47 FTHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 226 F P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65 Query: 227 KINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 406 K++K+EI+EAVTIIETPPMV VGVVGY+ TP GLR+L TVWAEH+SE+ +RRFYKNW+ Sbjct: 66 KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125 Query: 407 XXXXXXXXXXXWQDELGRKSIXKDFKXMIRYCXVVRVIAHTQMXLLKQRQKXAHIMEIQL 586 + + +SI ++ + + +YC VVRV+AHTQ+ QK AH+MEIQ+ Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183 Query: 587 NGGTIXDKXKWATXHLEKPI 646 NGG++ DK +WA H EK + Sbjct: 184 NGGSVADKVEWAREHFEKTV 203 >SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 388 Score = 264 bits (647), Expect = 8e-72 Identities = 118/200 (59%), Positives = 151/200 (75%) Frame = +2 Query: 47 FTHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 226 F P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65 Query: 227 KINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 406 K++K+EI+EAVT+IETPPMV VGVVGY+ TP GLR+L TVWAEH+SE+ +RRFYKNW+ Sbjct: 66 KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125 Query: 407 XXXXXXXXXXXWQDELGRKSIXKDFKXMIRYCXVVRVIAHTQMXLLKQRQKXAHIMEIQL 586 + + +SI ++ + + +YC VVRV+AHTQ+ QK AH+MEIQ+ Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183 Query: 587 NGGTIXDKXKWATXHLEKPI 646 NGG++ DK +WA H EK + Sbjct: 184 NGGSVADKVEWAREHFEKTV 203 >SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces pombe|chr 3|||Manual Length = 554 Score = 27.1 bits (57), Expect = 2.3 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = -3 Query: 208 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMSGVRENFL 38 F N VG G+I D S + +R+VF D +G L ++SH +P + V FL Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIFL 401 >SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1101 Score = 26.2 bits (55), Expect = 4.1 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Frame = +1 Query: 385 LQKLVQMQEEGFH*SX*XMAG*AWTQINXKRFQEXDPLLXCC-KSHCPHSNEXVKTATKE 561 L KL+Q+ M+ + I+ K+F+E D L CC +SH ++ ++ Sbjct: 284 LNKLIQLNSAFLDEFEAIMSDLNFEDIDEKKFEEIDLRLACCFESHFFAFSQHYPRYLEQ 343 Query: 562 XSHYGN 579 + +GN Sbjct: 344 SNDFGN 349 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,592,514 Number of Sequences: 5004 Number of extensions: 49087 Number of successful extensions: 114 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 108 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 112 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 293780908 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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