Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O23
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               281   5e-76
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         238   3e-63
SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  281 bits (688), Expect = 5e-76
 Identities = 125/202 (61%), Positives = 150/202 (74%), Gaps = 1/202 (0%)
 Frame = +2

Query: 47  FTHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 226
           F  P HGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE ++PGS
Sbjct: 5   FEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVEKPGS 64

Query: 227 KINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 406
           K+NKKE VEAVTIIETPPM+ VGVVGYI TP G+R L T+WAEH+SE+C+RRFYKNW   
Sbjct: 65  KLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKNWCNS 124

Query: 407 XXXXXXXXXXXWQDELGRKSIXKDFKXMIRYCXVVRVIAHTQMXLLKQRQKXAHIMEIQL 586
                      W D+ G+KSI +DF  M +YC V+RVI HTQ  LLK RQK AHIMEIQ+
Sbjct: 125 KKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQQKLLKMRQKKAHIMEIQV 184

Query: 587 NGG-TIXDKXKWATXHLEKPIP 649
           NGG  + +K  W    LE P P
Sbjct: 185 NGGKDVAEKVDWCRERLENPAP 206


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  238 bits (582), Expect = 3e-63
 Identities = 103/167 (61%), Positives = 128/167 (76%)
 Frame = +2

Query: 32  VAQKIFTHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 211
           ++ + F  P HGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE 
Sbjct: 48  MSHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREV 107

Query: 212 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYK 391
           ++PGSK+NKKE VEAVTIIETPPM+ VGVVGYI TP G+R L T+WAEH+SE+C+RRFYK
Sbjct: 108 EKPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYK 167

Query: 392 NWYXXXXXXXXXXXXXWQDELGRKSIXKDFKXMIRYCXVVRVIAHTQ 532
           NW              W D+ G+KSI +DF  M +YC V+RVI HTQ
Sbjct: 168 NWCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQ 214


>SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 272 TPPMVCVGVVGYIXTPHGLRAL-LTVWAEHMSEDCRRRFY 388
           TP  +C+G  GY+ T   L+ L LTV    M E  + +++
Sbjct: 301 TPGRLCIGSYGYVATQQFLQLLRLTVLPPVMIEKAKNQYH 340


>SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 98  RRHRGKVKAFPKDDPSKPVHL 160
           R HR  + AFP D P+ PV L
Sbjct: 7   RAHRSSLHAFPPDGPAHPVSL 27


>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 98  RRHRGKVKAFPKDDPSKPVHL 160
           R HR  + AFP D P+ PV L
Sbjct: 15  RAHRSSLHAFPPDGPAHPVSL 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,208,890
Number of Sequences: 59808
Number of extensions: 405327
Number of successful extensions: 889
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)