Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_O23
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 258 3e-69
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 251 3e-67
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 251 3e-67
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil... 31 0.66
At1g29195.1 68414.m03572 expressed protein 30 1.2
At3g23960.1 68416.m03010 F-box family protein contains F-box dom... 27 8.2
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 258 bits (631), Expect = 3e-69
Identities = 117/207 (56%), Positives = 150/207 (72%), Gaps = 1/207 (0%)
Frame = +2
Query: 32 VAQKIFTHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 211
++ + F HP HGS+GF P+KR+ RHRGKVKAFPKDDP+KP LT+F+GYKAGMTH+VR+
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDV 60
Query: 212 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYK 391
++PGSK++KKE EAVTIIETPPMV VGVVGY+ TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYK 120
Query: 392 NWYXXXXXXXXXXXXXWQDELGRKSIXKDFKXMIRYCXVVRVIAHTQMXLLK-QRQKXAH 568
NW + E G+K I + M +YC V+RV+AHTQ+ +K +QK AH
Sbjct: 121 NWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAH 180
Query: 569 IMEIQLNGGTIXDKXKWATXHLEKPIP 649
+ EIQ+NGG I K +A EK +P
Sbjct: 181 LNEIQINGGDIAKKVDYACSLFEKQVP 207
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 251 bits (614), Expect = 3e-67
Identities = 117/207 (56%), Positives = 147/207 (71%), Gaps = 1/207 (0%)
Frame = +2
Query: 32 VAQKIFTHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 211
++ + F HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP TAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 212 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYK 391
++PGSK++KKE EAVTIIETP MV VGVV Y+ TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 392 NWYXXXXXXXXXXXXXWQDELGRKSIXKDFKXMIRYCXVVRVIAHTQMXLLK-QRQKXAH 568
NW + E G+K I + M +Y V+RV+AHTQ+ +K +QK AH
Sbjct: 121 NWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAH 180
Query: 569 IMEIQLNGGTIXDKXKWATXHLEKPIP 649
+MEIQ+NGGTI K +A EK IP
Sbjct: 181 MMEIQINGGTIAQKVDFAYSFFEKQIP 207
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 251 bits (614), Expect = 3e-67
Identities = 117/207 (56%), Positives = 147/207 (71%), Gaps = 1/207 (0%)
Frame = +2
Query: 32 VAQKIFTHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 211
++ + F HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP TAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 212 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIXTPHGLRALLTVWAEHMSEDCRRRFYK 391
++PGSK++KKE EAVTIIETP MV VGVV Y+ TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 392 NWYXXXXXXXXXXXXXWQDELGRKSIXKDFKXMIRYCXVVRVIAHTQMXLLK-QRQKXAH 568
NW + E G+K I + M +Y V+RV+AHTQ+ +K +QK AH
Sbjct: 121 NWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAH 180
Query: 569 IMEIQLNGGTIXDKXKWATXHLEKPIP 649
+MEIQ+NGGTI K +A EK IP
Sbjct: 181 MMEIQINGGTIAQKVDFAYSFFEKQIP 207
>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
[Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
profile PF03328: HpcH/HpaI aldolase family
Length = 358
Score = 31.1 bits (67), Expect = 0.66
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = -3
Query: 391 FVEATSTVFRHMLRPDSQQSA*SMRGXNVSNNTDTNHRRSLDDGDSLHDLFLVDF*TGTV 212
F T T R+ P A ++ ++N + T+ + L G++L+ LFL+ F
Sbjct: 46 FSRKTLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGLFLLSFSPTLA 103
Query: 211 RFSNHVGHTGLITD 170
+ H G+ ++ D
Sbjct: 104 EIAAHAGYDYVVVD 117
>At1g29195.1 68414.m03572 expressed protein
Length = 193
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 158 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 280
+TA KA HV+++P P S ++++++ A I+ PP
Sbjct: 37 ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77
>At3g23960.1 68416.m03010 F-box family protein contains F-box domain
Pfam:PF00646
Length = 402
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = -3
Query: 172 DKSSQMNRFARVVFRERLDLTTMTT------GPLFGIESHRPMSGVRENFLCDMLEDSRK 11
D S+M F V +RE TT+ G L G E+H+ +SG+ +F +LED+ K
Sbjct: 262 DIRSEMFNFMEV-YRELSYTTTLINYNNGKLGMLMGQEAHKTISGICRSFELWVLEDTVK 320
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,961,889
Number of Sequences: 28952
Number of extensions: 274864
Number of successful extensions: 638
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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