BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_O22 (652 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 27 2.3 SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 27 2.3 SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 3.1 SPBC800.07c |tsf1||mitochondrial translation elongation factor E... 26 4.1 SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 5.4 SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 7.2 SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 7.2 SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 7.2 SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 7.2 SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 25 9.5 >SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity factor complex subunit Ysh1|Schizosaccharomyces pombe|chr 1|||Manual Length = 775 Score = 27.1 bits (57), Expect = 2.3 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = -3 Query: 266 LEKAWAPDPKSSLTARAHSNECAMSK 189 L + WAPDP+++L +S E M+K Sbjct: 365 LLERWAPDPRNTLLLTGYSVEGTMAK 390 >SPBC36.02c |||spermidine family transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 577 Score = 27.1 bits (57), Expect = 2.3 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 1/98 (1%) Frame = +1 Query: 103 EIEQKTNTMDPESFLDLANQVIKLKMYPYFDIAHSLLCALAVREDLGSGAQAFSRKHPLS 282 E E+ ++DP+S L N K K+ +A+ LC+ A+A + +S Sbjct: 110 EPERFVFSIDPKSPLIAVNWPFKRKLKTTCILAYVALCSSFASSVFAVPAEAITTVFHIS 169 Query: 283 CWLSTM-LVIFAGGMVANGLLGEPILAPLKNTPQLVIG 393 +S + + +F G + ++ P+ P ++IG Sbjct: 170 LTVSLLTMTVFLLGYCSGPIIWAPLSELSGRKPPILIG 207 >SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 398 Score = 26.6 bits (56), Expect = 3.1 Identities = 14/49 (28%), Positives = 21/49 (42%) Frame = -3 Query: 308 ITSIVDSQHDSGCFLEKAWAPDPKSSLTARAHSNECAMSKYGYIFNFMT 162 + SIV D L WA + L + S E + KY + N++T Sbjct: 142 LKSIVQGIRDKDLKLPIEWASQCRGYLERKGSSLEYTLQKYRLVSNYLT 190 >SPBC800.07c |tsf1||mitochondrial translation elongation factor EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 299 Score = 26.2 bits (55), Expect = 4.1 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -3 Query: 395 VPMTNWGVFFNGAKMGSPRRPLATI 321 VP T G+F +GAK SP + L I Sbjct: 207 VPSTAIGIFSHGAKQSSPLQQLGRI 231 >SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces pombe|chr 2|||Manual Length = 517 Score = 25.8 bits (54), Expect = 5.4 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = +1 Query: 310 FAGGMVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYTPF 429 F G++ G + P+L L PQ V+ + W + F F Sbjct: 379 FIQGLMTVGTMTGPLLLVLHQIPQCVLAGLFWVMGFSAIF 418 >SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1958 Score = 25.4 bits (53), Expect = 7.2 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +3 Query: 309 IRRRYGSQWSSRRTHFGAVEEYTPISHRN 395 +RRRY Q S+ EEY PI H N Sbjct: 945 LRRRYSKQ-HSKHLESVVYEEYHPILHSN 972 >SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22|Schizosaccharomyces pombe|chr 3|||Manual Length = 1680 Score = 25.4 bits (53), Expect = 7.2 Identities = 19/76 (25%), Positives = 34/76 (44%) Frame = -3 Query: 407 YHVTVPMTNWGVFFNGAKMGSPRRPLATIPPANITSIVDSQHDSGCFLEKAWAPDPKSSL 228 YH M + + NG++M + P PPAN T++ S S F + + ++ Sbjct: 186 YHNAYDMAS--MMKNGSRMNNSFPPTTPYPPANDTTVNSSLPHS--FASPSSTFEQPHTV 241 Query: 227 TARAHSNECAMSKYGY 180 +RA S + S + + Sbjct: 242 QSRAPSVDTTSSSHSF 257 >SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 1310 Score = 25.4 bits (53), Expect = 7.2 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = -3 Query: 632 RISLSTNFVKPAPLPFNVPTMTIMT*AFGYSLAAWLTPS*TXL 504 +I L N +P P PFN+ I A L WL P+ T L Sbjct: 1178 KILLWQNHERP-PRPFNLTPFAISLNALTPQLKPWLPPTDTRL 1219 >SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual Length = 1828 Score = 25.4 bits (53), Expect = 7.2 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 11/67 (16%) Frame = +1 Query: 199 AHSLLCALAVREDLGSGAQA---------FSRKHPLSCWLSTMLVIFAGGMVANGLL--G 345 AHS +CA + E +G +A S K P SC+ +T + + G L G Sbjct: 983 AHSNVCAARIYEHMGQAREAEFFYRQACSISEKMPFSCFSATFQLRLCSLLTRAGKLEKG 1042 Query: 346 EPILAPL 366 E IL L Sbjct: 1043 EKILFDL 1049 >SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity factor complex subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 456 Score = 25.0 bits (52), Expect = 9.5 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Frame = +1 Query: 187 YFDIAHSLLCALAVREDLGSGAQ----AFSRKHPLSCWLSTMLVIFAGGMV 327 Y DI HS++ + + G++ + RK+ + WLS + V +GG + Sbjct: 245 YQDILHSIITDFRINIIIVLGSERLYSSMKRKYADATWLSVVKVSSSGGCI 295 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,730,357 Number of Sequences: 5004 Number of extensions: 54850 Number of successful extensions: 136 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 131 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 136 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 293780908 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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