Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O22
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    27   2.3  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    27   2.3  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   3.1  
SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    26   4.1  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   5.4  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   7.2  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   7.2  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   7.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   7.2  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    25   9.5  

>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 266 LEKAWAPDPKSSLTARAHSNECAMSK 189
           L + WAPDP+++L    +S E  M+K
Sbjct: 365 LLERWAPDPRNTLLLTGYSVEGTMAK 390


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
 Frame = +1

Query: 103 EIEQKTNTMDPESFLDLANQVIKLKMYPYFDIAHSLLCALAVREDLGSGAQAFSRKHPLS 282
           E E+   ++DP+S L   N   K K+     +A+  LC+          A+A +    +S
Sbjct: 110 EPERFVFSIDPKSPLIAVNWPFKRKLKTTCILAYVALCSSFASSVFAVPAEAITTVFHIS 169

Query: 283 CWLSTM-LVIFAGGMVANGLLGEPILAPLKNTPQLVIG 393
             +S + + +F  G  +  ++  P+       P ++IG
Sbjct: 170 LTVSLLTMTVFLLGYCSGPIIWAPLSELSGRKPPILIG 207


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -3

Query: 308 ITSIVDSQHDSGCFLEKAWAPDPKSSLTARAHSNECAMSKYGYIFNFMT 162
           + SIV    D    L   WA   +  L  +  S E  + KY  + N++T
Sbjct: 142 LKSIVQGIRDKDLKLPIEWASQCRGYLERKGSSLEYTLQKYRLVSNYLT 190


>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 395 VPMTNWGVFFNGAKMGSPRRPLATI 321
           VP T  G+F +GAK  SP + L  I
Sbjct: 207 VPSTAIGIFSHGAKQSSPLQQLGRI 231


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 310 FAGGMVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYTPF 429
           F  G++  G +  P+L  L   PQ V+  + W + F   F
Sbjct: 379 FIQGLMTVGTMTGPLLLVLHQIPQCVLAGLFWVMGFSAIF 418


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 309  IRRRYGSQWSSRRTHFGAVEEYTPISHRN 395
            +RRRY  Q  S+       EEY PI H N
Sbjct: 945  LRRRYSKQ-HSKHLESVVYEEYHPILHSN 972


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = -3

Query: 407 YHVTVPMTNWGVFFNGAKMGSPRRPLATIPPANITSIVDSQHDSGCFLEKAWAPDPKSSL 228
           YH    M +  +  NG++M +   P    PPAN T++  S   S  F   +   +   ++
Sbjct: 186 YHNAYDMAS--MMKNGSRMNNSFPPTTPYPPANDTTVNSSLPHS--FASPSSTFEQPHTV 241

Query: 227 TARAHSNECAMSKYGY 180
            +RA S +   S + +
Sbjct: 242 QSRAPSVDTTSSSHSF 257


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 632  RISLSTNFVKPAPLPFNVPTMTIMT*AFGYSLAAWLTPS*TXL 504
            +I L  N  +P P PFN+    I   A    L  WL P+ T L
Sbjct: 1178 KILLWQNHERP-PRPFNLTPFAISLNALTPQLKPWLPPTDTRL 1219


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
 Frame = +1

Query: 199  AHSLLCALAVREDLGSGAQA---------FSRKHPLSCWLSTMLVIFAGGMVANGLL--G 345
            AHS +CA  + E +G   +A          S K P SC+ +T  +     +   G L  G
Sbjct: 983  AHSNVCAARIYEHMGQAREAEFFYRQACSISEKMPFSCFSATFQLRLCSLLTRAGKLEKG 1042

Query: 346  EPILAPL 366
            E IL  L
Sbjct: 1043 EKILFDL 1049


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +1

Query: 187 YFDIAHSLLCALAVREDLGSGAQ----AFSRKHPLSCWLSTMLVIFAGGMV 327
           Y DI HS++    +   +  G++    +  RK+  + WLS + V  +GG +
Sbjct: 245 YQDILHSIITDFRINIIIVLGSERLYSSMKRKYADATWLSVVKVSSSGGCI 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,357
Number of Sequences: 5004
Number of extensions: 54850
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)