Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O22
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1698 + 28803971-28804534,28804614-28804696,28804780-288049...    28   5.6  
05_07_0043 - 27284814-27285190,27285287-27285488,27285576-272856...    28   5.6  
09_04_0379 - 17094540-17094868,17095354-17095717                       27   9.8  
07_03_1786 - 29507906-29508898                                         27   9.8  

>07_03_1698 +
           28803971-28804534,28804614-28804696,28804780-28804900,
           28804982-28805155,28805245-28805349,28805439-28805765
          Length = 457

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -3

Query: 416 KTKY--HVTVPMTNWG-VFFNGAKMGSPRRPLATIPPANITSIVDSQHDSG 273
           +TKY  ++ +   N G +FF   K G  R  LA I  A I S V   HD+G
Sbjct: 188 QTKYRLYLVLDFINGGHLFFQLYKQGLFREELARIYTAEIVSAVAHLHDNG 238


>05_07_0043 -
           27284814-27285190,27285287-27285488,27285576-27285650,
           27285743-27285816,27285909-27285996,27286081-27286203,
           27288374-27288580,27288631-27288636
          Length = 383

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -3

Query: 356 KMGSPRRPLATIPPANITSIVDSQHDSGCFLE----KAWAPDPKSSLTARAH 213
           +M +PR+P + I P NI+S       +G   E    K +AP P + +T   H
Sbjct: 284 EMETPRKPFSQITPGNISSAPVRPISTGGTEENRTPKTFAPVPTTPMTVSPH 335


>09_04_0379 - 17094540-17094868,17095354-17095717
          Length = 230

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 483 DERNIXSQXSLRWSQPRSQTVPERLRH 563
           D   +    S RW + R++ +P R+RH
Sbjct: 159 DYEEVSPGCSRRWKEARNRAIPRRIRH 185


>07_03_1786 - 29507906-29508898
          Length = 330

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = +3

Query: 156 QSGHKVENVSIFRHSAFVAVRSCSQRRFG--IRCPGLFQEASTVMLAVHYASDIRRRYGS 329
           QS H+   +  F++    A+++  +R     + C  +   A+   +A+     +  R G 
Sbjct: 93  QSSHRSFGMRNFKY--ITAIKAAVERECPATVSCADILALAARDGVAMLGGPSVAMRTGR 150

Query: 330 QWSSRRTHFGAVEEYTPISHRNCYMVLS 413
           +  SR +++G VE+Y P  + +   VLS
Sbjct: 151 R-DSRESYYGVVEQYIPNHNDSVSTVLS 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,507,374
Number of Sequences: 37544
Number of extensions: 399026
Number of successful extensions: 916
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)