Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O22
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34108| Best HMM Match : DUF714 (HMM E-Value=0.0053)                 48   9e-06
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_38926| Best HMM Match : TPR_1 (HMM E-Value=0)                       29   2.5  
SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_44829| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_12498| Best HMM Match : TPR_1 (HMM E-Value=0)                       29   3.3  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)                  29   4.3  
SB_17196| Best HMM Match : Trypsin (HMM E-Value=0.027)                 28   7.6  
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          28   7.6  
SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_34108| Best HMM Match : DUF714 (HMM E-Value=0.0053)
          Length = 455

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 22/62 (35%), Positives = 32/62 (51%)
 Frame = +1

Query: 406 YLVFYTPFDVXYXVXXFLPVKVVAAAMKEIYXAXKVYDGVSHAAKLYPNAYVIMVIVGTL 585
           YLVFY PFD+        P  +    +KE + A  +  GVS   + YP   +++V+VG  
Sbjct: 106 YLVFYCPFDIFNKFFMLQPAWLSLVVLKEAHRAKAILGGVSMGLEHYPTDLLVVVLVGIF 165

Query: 586 KG 591
           KG
Sbjct: 166 KG 167


>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +3

Query: 150  PGQSGHKVENVSIFRHSAFVAVRSCSQRRFGIRCP--GLFQEASTVMLAVHYASDIRRRY 323
            PG  GH  + + + +    V V+       G+ CP   LF+ +  V + + +    ++ +
Sbjct: 1747 PGAEGHFYDKIMMLKQFDTVKVQLSGHLTKGVLCPEIQLFKVSPRVSICLEHRVHTKKCF 1806

Query: 324  GS--QWSSRRTHFGAVEEY 374
             S  ++++ R H+  ++ Y
Sbjct: 1807 ASTARFTASREHYDTIDNY 1825


>SB_38926| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 375

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 588 FQRTNNDHNDVSVRVQFGCVADSIVNFXGXVYFF 487
           F+RT N+ +   VR   G V DS+ N+   + ++
Sbjct: 171 FERTGNESDQADVRQNIGAVQDSVGNYEEAMKYY 204



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 588 FQRTNNDHNDVSVRVQFGCVADSIVNFXGXVYFF 487
           F+RT N+ +   VR   G V DS+ N+   + ++
Sbjct: 251 FERTGNESDQADVRQNIGAVQDSLGNYEEAMKYY 284


>SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 256 AFSRKHPLSCWLSTM-LVIFAGGMVANGLLGEPILAPLK 369
           AF +++PL    S    VI + GMV N L+  P+L P+K
Sbjct: 118 AFHKRYPLFASASDDGTVIISHGMVYNDLMQNPLLVPVK 156


>SB_44829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 155 ARSKNDSGSIVLVFCSISPLYCNFMVQLNTDNNVIRXRTHATNRGRC 15
           ++S+ DSG  +L + + + L      +L  DNN    R+  +NR RC
Sbjct: 40  SKSRKDSGHKILQYIACTTLGATTGSELPGDNNFREARSLHSNRCRC 86


>SB_12498| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 495

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 588 FQRTNNDHNDVSVRVQFGCVADSIVNFXGXVYFF 487
           F+RT N+ +   VR   G V DS+ N+   + ++
Sbjct: 371 FERTGNESDQADVRQNIGAVQDSLGNYEEAMKYY 404



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 588 FQRTNNDHNDVSVRVQFGCVADSIVNFXGXVYFF 487
           F+RT N+     VR   G V DS+ N+   + ++
Sbjct: 91  FERTGNESKQAKVRHNIGVVQDSLGNYEEAMKYY 124


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 217  ALAVRED-LGSGAQAFSRKHPLSCWL 291
            A  VRED +   AQAF+R+HP + WL
Sbjct: 3873 ARGVREDSVTPSAQAFARQHPRAYWL 3898


>SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)
          Length = 822

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 317 PANITSIVDSQHDSGCFLEKAWAPDP 240
           P+   S  D QHD+  F  KAW P P
Sbjct: 155 PSKPDSQHDRQHDTSLFRHKAWCPCP 180


>SB_17196| Best HMM Match : Trypsin (HMM E-Value=0.027)
          Length = 379

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 52  ITLLSVFSCTIKLQYNGEIEQKTNTM-DPESFLD 150
           +TL+ V + T   + +GE    TNT  DPE FLD
Sbjct: 90  LTLVKVENTTTATRQSGEGSGNTNTSDDPEDFLD 123


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +2

Query: 8   RGNIDRGWSHACVSLSHYCRCLVVP*NYNTTVKLNKKLTQWI 133
           RG I   W H C+++      +V+  N      LNK    WI
Sbjct: 409 RGTISNNWKHVCINILE----IVIAANPPDAPSLNKYYVDWI 446


>SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 2   ESRGNIDRGWSHACVSLSHYCRCLV 76
           ES G    GW H C+     CRC +
Sbjct: 164 ESDGAARIGWKHGCLRCPKKCRCYI 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,055,892
Number of Sequences: 59808
Number of extensions: 436022
Number of successful extensions: 899
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)