BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_O22 (652 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_34108| Best HMM Match : DUF714 (HMM E-Value=0.0053) 48 9e-06 SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4 SB_38926| Best HMM Match : TPR_1 (HMM E-Value=0) 29 2.5 SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5 SB_44829| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3 SB_12498| Best HMM Match : TPR_1 (HMM E-Value=0) 29 3.3 SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3 SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089) 29 4.3 SB_17196| Best HMM Match : Trypsin (HMM E-Value=0.027) 28 7.6 SB_9053| Best HMM Match : TIG (HMM E-Value=0) 28 7.6 SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6 >SB_34108| Best HMM Match : DUF714 (HMM E-Value=0.0053) Length = 455 Score = 47.6 bits (108), Expect = 9e-06 Identities = 22/62 (35%), Positives = 32/62 (51%) Frame = +1 Query: 406 YLVFYTPFDVXYXVXXFLPVKVVAAAMKEIYXAXKVYDGVSHAAKLYPNAYVIMVIVGTL 585 YLVFY PFD+ P + +KE + A + GVS + YP +++V+VG Sbjct: 106 YLVFYCPFDIFNKFFMLQPAWLSLVVLKEAHRAKAILGGVSMGLEHYPTDLLVVVLVGIF 165 Query: 586 KG 591 KG Sbjct: 166 KG 167 >SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2202 Score = 30.3 bits (65), Expect = 1.4 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 4/79 (5%) Frame = +3 Query: 150 PGQSGHKVENVSIFRHSAFVAVRSCSQRRFGIRCP--GLFQEASTVMLAVHYASDIRRRY 323 PG GH + + + + V V+ G+ CP LF+ + V + + + ++ + Sbjct: 1747 PGAEGHFYDKIMMLKQFDTVKVQLSGHLTKGVLCPEIQLFKVSPRVSICLEHRVHTKKCF 1806 Query: 324 GS--QWSSRRTHFGAVEEY 374 S ++++ R H+ ++ Y Sbjct: 1807 ASTARFTASREHYDTIDNY 1825 >SB_38926| Best HMM Match : TPR_1 (HMM E-Value=0) Length = 375 Score = 29.5 bits (63), Expect = 2.5 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = -2 Query: 588 FQRTNNDHNDVSVRVQFGCVADSIVNFXGXVYFF 487 F+RT N+ + VR G V DS+ N+ + ++ Sbjct: 171 FERTGNESDQADVRQNIGAVQDSVGNYEEAMKYY 204 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = -2 Query: 588 FQRTNNDHNDVSVRVQFGCVADSIVNFXGXVYFF 487 F+RT N+ + VR G V DS+ N+ + ++ Sbjct: 251 FERTGNESDQADVRQNIGAVQDSLGNYEEAMKYY 284 >SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 559 Score = 29.5 bits (63), Expect = 2.5 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +1 Query: 256 AFSRKHPLSCWLSTM-LVIFAGGMVANGLLGEPILAPLK 369 AF +++PL S VI + GMV N L+ P+L P+K Sbjct: 118 AFHKRYPLFASASDDGTVIISHGMVYNDLMQNPLLVPVK 156 >SB_44829| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 236 Score = 29.1 bits (62), Expect = 3.3 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -3 Query: 155 ARSKNDSGSIVLVFCSISPLYCNFMVQLNTDNNVIRXRTHATNRGRC 15 ++S+ DSG +L + + + L +L DNN R+ +NR RC Sbjct: 40 SKSRKDSGHKILQYIACTTLGATTGSELPGDNNFREARSLHSNRCRC 86 >SB_12498| Best HMM Match : TPR_1 (HMM E-Value=0) Length = 495 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = -2 Query: 588 FQRTNNDHNDVSVRVQFGCVADSIVNFXGXVYFF 487 F+RT N+ + VR G V DS+ N+ + ++ Sbjct: 371 FERTGNESDQADVRQNIGAVQDSLGNYEEAMKYY 404 Score = 27.9 bits (59), Expect = 7.6 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = -2 Query: 588 FQRTNNDHNDVSVRVQFGCVADSIVNFXGXVYFF 487 F+RT N+ VR G V DS+ N+ + ++ Sbjct: 91 FERTGNESKQAKVRHNIGVVQDSLGNYEEAMKYY 124 >SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4085 Score = 29.1 bits (62), Expect = 3.3 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = +1 Query: 217 ALAVRED-LGSGAQAFSRKHPLSCWL 291 A VRED + AQAF+R+HP + WL Sbjct: 3873 ARGVREDSVTPSAQAFARQHPRAYWL 3898 >SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089) Length = 822 Score = 28.7 bits (61), Expect = 4.3 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -3 Query: 317 PANITSIVDSQHDSGCFLEKAWAPDP 240 P+ S D QHD+ F KAW P P Sbjct: 155 PSKPDSQHDRQHDTSLFRHKAWCPCP 180 >SB_17196| Best HMM Match : Trypsin (HMM E-Value=0.027) Length = 379 Score = 27.9 bits (59), Expect = 7.6 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +1 Query: 52 ITLLSVFSCTIKLQYNGEIEQKTNTM-DPESFLD 150 +TL+ V + T + +GE TNT DPE FLD Sbjct: 90 LTLVKVENTTTATRQSGEGSGNTNTSDDPEDFLD 123 >SB_9053| Best HMM Match : TIG (HMM E-Value=0) Length = 2990 Score = 27.9 bits (59), Expect = 7.6 Identities = 13/42 (30%), Positives = 18/42 (42%) Frame = +2 Query: 8 RGNIDRGWSHACVSLSHYCRCLVVP*NYNTTVKLNKKLTQWI 133 RG I W H C+++ +V+ N LNK WI Sbjct: 409 RGTISNNWKHVCINILE----IVIAANPPDAPSLNKYYVDWI 446 >SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 312 Score = 27.9 bits (59), Expect = 7.6 Identities = 10/25 (40%), Positives = 12/25 (48%) Frame = +2 Query: 2 ESRGNIDRGWSHACVSLSHYCRCLV 76 ES G GW H C+ CRC + Sbjct: 164 ESDGAARIGWKHGCLRCPKKCRCYI 188 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,055,892 Number of Sequences: 59808 Number of extensions: 436022 Number of successful extensions: 899 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 836 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 898 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1657237625 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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