BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_O22 (652 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g54980.1 68416.m06100 pentatricopeptide (PPR) repeat-containi... 31 0.50 At5g64530.1 68418.m08110 no apical meristem (NAM) family protein... 28 4.7 At5g67340.1 68418.m08492 armadillo/beta-catenin repeat family pr... 27 8.2 At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 27 8.2 At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 27 8.2 >At3g54980.1 68416.m06100 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 851 Score = 31.5 bits (68), Expect = 0.50 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +1 Query: 145 LDLANQVIKLKMYPYFDIAHSLLCALAVREDLGSGAQAFSR 267 +D+ NQ+++L + P+F + L AL R L + +SR Sbjct: 183 VDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKELYSR 223 >At5g64530.1 68418.m08110 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAM (no apical meristem) Length = 187 Score = 28.3 bits (60), Expect = 4.7 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = -2 Query: 276 WMLPGKGLGTGSQIFSDCKSAQQRMRYVEIW 184 W LPGK LG G Q + + Q+R+ W Sbjct: 46 WDLPGKALGEGRQWYFYSRKTQERVTSNGYW 76 >At5g67340.1 68418.m08492 armadillo/beta-catenin repeat family protein / U-box domain-containing protein contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain Length = 707 Score = 27.5 bits (58), Expect = 8.2 Identities = 12/46 (26%), Positives = 24/46 (52%) Frame = -3 Query: 155 ARSKNDSGSIVLVFCSISPLYCNFMVQLNTDNNVIRXRTHATNRGR 18 AR K ++ + +L C+ SP +CN +++ ++ T RG+ Sbjct: 641 ARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGK 686 >At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical to ribosomal protein GI:166858 from [Arabidopsis thaliana] Length = 389 Score = 27.5 bits (58), Expect = 8.2 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%) Frame = +3 Query: 147 RPGQSGHKVEN---VSIFRHSAFVAVRSCSQRRFGIRCPGLFQEASTVMLAVHYASDIRR 317 +PG HK E V+I A V V + ++ P + +TV A H + ++RR Sbjct: 62 KPGSKLHKKETCEAVTIIETPAMVVVGVVAY----VKTPRGLRSLNTVW-AQHLSEEVRR 116 Query: 318 RYGSQW--SSRRTHFGAVEEY 374 R+ W S ++ G ++Y Sbjct: 117 RFYKNWAKSKKKAFTGYAKQY 137 >At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical to ribosomal protein GI:166858 from [Arabidopsis thaliana] Length = 389 Score = 27.5 bits (58), Expect = 8.2 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%) Frame = +3 Query: 147 RPGQSGHKVEN---VSIFRHSAFVAVRSCSQRRFGIRCPGLFQEASTVMLAVHYASDIRR 317 +PG HK E V+I A V V + ++ P + +TV A H + ++RR Sbjct: 62 KPGSKLHKKETCEAVTIIETPAMVVVGVVAY----VKTPRGLRSLNTVW-AQHLSEEVRR 116 Query: 318 RYGSQW--SSRRTHFGAVEEY 374 R+ W S ++ G ++Y Sbjct: 117 RFYKNWAKSKKKAFTGYAKQY 137 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,412,018 Number of Sequences: 28952 Number of extensions: 299262 Number of successful extensions: 747 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 734 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 747 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1354097952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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