Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O22
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54980.1 68416.m06100 pentatricopeptide (PPR) repeat-containi...    31   0.50 
At5g64530.1 68418.m08110 no apical meristem (NAM) family protein...    28   4.7  
At5g67340.1 68418.m08492 armadillo/beta-catenin repeat family pr...    27   8.2  
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...    27   8.2  
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...    27   8.2  

>At3g54980.1 68416.m06100 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 851

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 145 LDLANQVIKLKMYPYFDIAHSLLCALAVREDLGSGAQAFSR 267
           +D+ NQ+++L + P+F   +  L AL  R  L    + +SR
Sbjct: 183 VDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKELYSR 223


>At5g64530.1 68418.m08110 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAM (no apical meristem)
          Length = 187

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 276 WMLPGKGLGTGSQIFSDCKSAQQRMRYVEIW 184
           W LPGK LG G Q +   +  Q+R+     W
Sbjct: 46  WDLPGKALGEGRQWYFYSRKTQERVTSNGYW 76


>At5g67340.1 68418.m08492 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 707

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -3

Query: 155 ARSKNDSGSIVLVFCSISPLYCNFMVQLNTDNNVIRXRTHATNRGR 18
           AR K ++ + +L  C+ SP +CN +++      ++      T RG+
Sbjct: 641 ARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGK 686


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
 Frame = +3

Query: 147 RPGQSGHKVEN---VSIFRHSAFVAVRSCSQRRFGIRCPGLFQEASTVMLAVHYASDIRR 317
           +PG   HK E    V+I    A V V   +     ++ P   +  +TV  A H + ++RR
Sbjct: 62  KPGSKLHKKETCEAVTIIETPAMVVVGVVAY----VKTPRGLRSLNTVW-AQHLSEEVRR 116

Query: 318 RYGSQW--SSRRTHFGAVEEY 374
           R+   W  S ++   G  ++Y
Sbjct: 117 RFYKNWAKSKKKAFTGYAKQY 137


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
 Frame = +3

Query: 147 RPGQSGHKVEN---VSIFRHSAFVAVRSCSQRRFGIRCPGLFQEASTVMLAVHYASDIRR 317
           +PG   HK E    V+I    A V V   +     ++ P   +  +TV  A H + ++RR
Sbjct: 62  KPGSKLHKKETCEAVTIIETPAMVVVGVVAY----VKTPRGLRSLNTVW-AQHLSEEVRR 116

Query: 318 RYGSQW--SSRRTHFGAVEEY 374
           R+   W  S ++   G  ++Y
Sbjct: 117 RFYKNWAKSKKKAFTGYAKQY 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,412,018
Number of Sequences: 28952
Number of extensions: 299262
Number of successful extensions: 747
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)