BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_O20 (386 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc... 55 4e-09 SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S... 52 4e-08 SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 24 7.2 SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo... 24 9.6 >SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosaccharomyces pombe|chr 2|||Manual Length = 74 Score = 54.8 bits (126), Expect = 4e-09 Identities = 30/70 (42%), Positives = 37/70 (52%) Frame = +2 Query: 68 MPREIKDIKDFLINGEEERRQIGQNKEEPXXXXXXXXXXXXXLYTLVITDKEKAEKLKQS 247 MPR+I DIK FL + + K+ LYTLV+ D +KAEKL+QS Sbjct: 1 MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60 Query: 248 LPPGLQVKEV 277 LPP L V EV Sbjct: 61 LPPDLTVTEV 70 >SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|Schizosaccharomyces pombe|chr 1|||Manual Length = 74 Score = 51.6 bits (118), Expect = 4e-08 Identities = 29/70 (41%), Positives = 36/70 (51%) Frame = +2 Query: 68 MPREIKDIKDFLINGEEERRQIGQNKEEPXXXXXXXXXXXXXLYTLVITDKEKAEKLKQS 247 MPR++ DIK FL + K+ LYTLV+ D +KAEKL+QS Sbjct: 1 MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60 Query: 248 LPPGLQVKEV 277 LPP L V EV Sbjct: 61 LPPALTVTEV 70 >SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces pombe|chr 1|||Manual Length = 797 Score = 24.2 bits (50), Expect = 7.2 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = +2 Query: 62 FNMPREIKDIKDFLINGEEERRQIGQNKEE 151 +N+PR + + D +N +E + NKEE Sbjct: 212 YNLPRFLASLIDASLNDTKEIEFVTSNKEE 241 >SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 328 Score = 23.8 bits (49), Expect = 9.6 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = -2 Query: 154 GFFFILTDLASFLL 113 GFFFIL L SFL+ Sbjct: 19 GFFFILFPLVSFLM 32 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,118,315 Number of Sequences: 5004 Number of extensions: 18330 Number of successful extensions: 51 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 48 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 128344734 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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