Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O20
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    55   4e-09
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    52   4e-08
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    24   7.2  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    24   9.6  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 54.8 bits (126), Expect = 4e-09
 Identities = 30/70 (42%), Positives = 37/70 (52%)
 Frame = +2

Query: 68  MPREIKDIKDFLINGEEERRQIGQNKEEPXXXXXXXXXXXXXLYTLVITDKEKAEKLKQS 247
           MPR+I DIK FL     +     + K+               LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 248 LPPGLQVKEV 277
           LPP L V EV
Sbjct: 61  LPPDLTVTEV 70


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 51.6 bits (118), Expect = 4e-08
 Identities = 29/70 (41%), Positives = 36/70 (51%)
 Frame = +2

Query: 68  MPREIKDIKDFLINGEEERRQIGQNKEEPXXXXXXXXXXXXXLYTLVITDKEKAEKLKQS 247
           MPR++ DIK FL           + K+               LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 248 LPPGLQVKEV 277
           LPP L V EV
Sbjct: 61  LPPALTVTEV 70


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 62  FNMPREIKDIKDFLINGEEERRQIGQNKEE 151
           +N+PR +  + D  +N  +E   +  NKEE
Sbjct: 212 YNLPRFLASLIDASLNDTKEIEFVTSNKEE 241


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 154 GFFFILTDLASFLL 113
           GFFFIL  L SFL+
Sbjct: 19  GFFFILFPLVSFLM 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,118,315
Number of Sequences: 5004
Number of extensions: 18330
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)