Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O20
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     53   9e-08
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     52   1e-07
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    50   5e-07
12_02_0604 + 20920609-20922144                                         27   6.9  
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744...    27   6.9  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 52.8 bits (121), Expect = 9e-08
 Identities = 29/70 (41%), Positives = 39/70 (55%)
 Frame = +2

Query: 68  MPREIKDIKDFLINGEEERRQIGQNKEEPXXXXXXXXXXXXXLYTLVITDKEKAEKLKQS 247
           MP++I +IKDFL+    +  +  + K                LYTL + D +KA KLKQS
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRY-LYTLCVHDTDKANKLKQS 59

Query: 248 LPPGLQVKEV 277
           LPPGL V+EV
Sbjct: 60  LPPGLTVQEV 69


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 29/70 (41%), Positives = 39/70 (55%)
 Frame = +2

Query: 68  MPREIKDIKDFLINGEEERRQIGQNKEEPXXXXXXXXXXXXXLYTLVITDKEKAEKLKQS 247
           MP++I +IKDFL+    +  +  + K                LYTL + D +KA KLKQS
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKY-LYTLCVFDADKANKLKQS 59

Query: 248 LPPGLQVKEV 277
           LPPGL V+EV
Sbjct: 60  LPPGLTVQEV 69


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 50.4 bits (115), Expect = 5e-07
 Identities = 28/69 (40%), Positives = 38/69 (55%)
 Frame = +2

Query: 71  PREIKDIKDFLINGEEERRQIGQNKEEPXXXXXXXXXXXXXLYTLVITDKEKAEKLKQSL 250
           P++I +IKDFL+    +  +  + K                LYTL + D +KA KLKQSL
Sbjct: 32  PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKY-LYTLCVFDADKANKLKQSL 90

Query: 251 PPGLQVKEV 277
           PPGL V+EV
Sbjct: 91  PPGLTVQEV 99


>12_02_0604 + 20920609-20922144
          Length = 511

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 114 RRKDAKSVKIKKNPAECQVQGFDAQGSCTPWSSLTKRRLRN 236
           R KDA++VK++    E  V     Q SC      TKR L N
Sbjct: 372 REKDAQAVKLRNELKELHVSMSQLQASCDELD--TKRSLLN 410


>02_05_0958 +
           33073302-33073442,33073839-33073913,33074382-33074497,
           33076863-33076977,33077100-33077228,33078907-33078954,
           33079343-33079469,33079634-33079789,33080031-33080287,
           33080431-33080580,33080660-33080714,33080793-33081088,
           33081252-33081335,33081869-33081941,33082164-33082291,
           33082905-33083090,33083179-33083316,33083394-33083519,
           33083705-33083965
          Length = 886

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 21  LLDPLTVLVENYSSSTCRVKSKISKTF 101
           +LD L V++EN SS+T   +S I+ T+
Sbjct: 395 ILDALAVVLENISSTTPVARSTIAATY 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,936,905
Number of Sequences: 37544
Number of extensions: 109114
Number of successful extensions: 269
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)