Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_O14
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 30 0.34
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 3.1
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 27 3.1
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb... 26 4.1
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 26 5.5
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 7.2
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.2
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 25 7.2
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 25 7.2
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch... 25 9.5
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 9.5
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 29.9 bits (64), Expect = 0.34
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 425 NATALREKLQAAVQNTVQESHKLAXKVSSNVQXTNXKLAPKIXAAYDD 568
N ++LRE L VQ V+E H + NV+ T ++ +I A DD
Sbjct: 751 NVSSLREDL--GVQINVEEGHIRIQGIKKNVEETAARIKSQIEALIDD 796
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +1
Query: 136 DAPDFFKDIEHHTKEFHKTLEQ--QFNSLTKSKDAQDFSKAW 255
D +F D++ H K FH E+ + + +K D K W
Sbjct: 665 DMKSYFSDLDRHMKYFHAMQEKDAELIEMAFAKKKADVRKEW 706
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 130 RRDAPDFFKDIEHHTKEFHKTLEQQFNSLT 219
++ DFFK + ++ H TL ++ NSL+
Sbjct: 56 KKSEQDFFKMLSSRDRDAHSTLRKRSNSLS 85
>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 353 LEQSRQNIERTAEELRKAHPDVEK 424
+EQ+R E T E++++A P++EK
Sbjct: 126 IEQARPTEEITIEDMKQAVPEIEK 149
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 100 CIALAQGAMVRRDAPDFFKDIEHHTKEFH-KTLEQQFNSLTKSKDAQDFSKAWKDGSESV 276
C + +G +RR P +++ I ++ KTL + FN+ + +++ + KA ++G V
Sbjct: 13 CEYVFKGDGLRRVPPYYYEYITFAKLRWYGKTLLEVFNTEFRDRESGYYEKAIRNGQVKV 72
Query: 277 LQQL 288
Q+
Sbjct: 73 NNQI 76
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 395 LRKAHPDVEKNATALREKLQAAVQNTVQE 481
L AH D+E T++RE+L++ + +E
Sbjct: 267 LDSAHSDLELELTSIRERLESLILEKQEE 295
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 109 LAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDA 234
L + V R F + +EH+ K+LE+Q + L +SKDA
Sbjct: 193 LKKSKSVPRLRGQFMEPVEHN-HPLSKSLEEQSSFLEQSKDA 233
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/62 (20%), Positives = 32/62 (51%)
Frame = +2
Query: 359 QSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESHKLAXKVSSNVQXTNXKL 538
++ Q +E E + P+V++ +EK ++ V+ +E K+S N++ ++ +
Sbjct: 138 ETSQKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKEE-----KISRNLRSSSRSI 192
Query: 539 AP 544
+P
Sbjct: 193 SP 194
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +2
Query: 320 LGDANGXAXEALEQSRQNIERTAEELRKAHPD---VEKNATALREKLQAAVQNTVQESHK 490
+ +A A ++LEQ+ + E L K H + E+ + +EKL A ++ + S +
Sbjct: 52 INEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEE 111
Query: 491 L 493
L
Sbjct: 112 L 112
>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 516 TFEDTXFANLWDSCTVFCTAACS--FSRRAVAFFSTSGWALRSSSAV 382
T + T N+WD TVF T+ +R +V F G A + +S V
Sbjct: 297 TGDITKCQNIWDVFTVFRTSRLGKLVTRYSVQFLEKIGVAAKGTSKV 343
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 447 FSRRAVAFFSTSGWALRSSSAVRSMF 370
FSR V FFS AL+S S + +MF
Sbjct: 570 FSRGGVLFFSILFCALQSLSEIANMF 595
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,734,048
Number of Sequences: 5004
Number of extensions: 26644
Number of successful extensions: 114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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