Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_O14
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 32 0.46
02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665 31 0.80
04_01_0180 + 2034021-2034023,2034741-2035088 31 1.1
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 27 9.9
05_01_0361 - 2824728-2826043,2826288-2826507,2827616-2827702,282... 27 9.9
03_06_0040 + 31240164-31241102,31241280-31241897 27 9.9
03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806... 27 9.9
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902... 27 9.9
>02_01_0075 -
522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 31.9 bits (69), Expect = 0.46
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +2
Query: 314 AALGDANGXAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESHKL 493
AA+ DA G +A+E ++ E+L A+PDVE L E L+ A ++ ++ L
Sbjct: 514 AAIYDAMGRVEDAIEILEHVLKVREEKLGTANPDVEDEKLRLAELLKEAGRSRNRKQKSL 573
Query: 494 AXKVSSNVQ 520
+N Q
Sbjct: 574 ENLFVTNSQ 582
>02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665
Length = 727
Score = 31.1 bits (67), Expect = 0.80
Identities = 24/80 (30%), Positives = 35/80 (43%)
Frame = +2
Query: 326 DANGXAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESHKLAXKV 505
DA G EA+E + E+L A+PDV+ L E L+ A + +++ L
Sbjct: 637 DAMGRLDEAIEILEHVVGMREEKLGTANPDVDDEKRRLAELLKEAGRGRSRKAKSL---- 692
Query: 506 SSNVQXTNXKLAPKIXAAYD 565
N+ TN K A YD
Sbjct: 693 -ENLLETNPYTVTKRVAKYD 711
>04_01_0180 + 2034021-2034023,2034741-2035088
Length = 116
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +2
Query: 347 EALEQSRQNIERTAEELRKAHPDVEKNATALREK---LQAAVQN 469
EALE+ QN+ R EE +K H +++K L K L AA +N
Sbjct: 52 EALERQVQNLTRYKEEKQKQHANLQKEFAELERKYRDLDAAHRN 95
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = +1
Query: 28 RFASPPHSVSRQHIMAAKFVVLFACIALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQF 207
RF + P S SR+ ++V A + +R A + +K + E H L +
Sbjct: 694 RFKAIP-SHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEGHTILIHKM 752
Query: 208 NSLTKSKDAQDFSKAW 255
+ +KD ++F + W
Sbjct: 753 QDINSNKDYKEFKRKW 768
>05_01_0361 -
2824728-2826043,2826288-2826507,2827616-2827702,
2827726-2827980,2828704-2828733
Length = 635
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 24 SPVRISSALSLSTA--HHGRQVRSSLRLHRSGPRSDGATRRSRLLQGHRTPHQGVP 185
SP R++ L T HH VR +HR+ P+ AT S + +G H +P
Sbjct: 473 SPSRVNPVLLCETGQRHHYSSVRHGDPVHRNSPQISVATSPSPIRRGD-PAHINIP 527
>03_06_0040 + 31240164-31241102,31241280-31241897
Length = 518
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 106 ALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKA--WKD 261
A+AQ RR+APD D+ +E L+ + N L + + D+ A W D
Sbjct: 190 AIAQSKTTRREAPDADTDMSMEAQELRHVLD-ELNPLIGAANLWDYLPALRWFD 242
>03_04_0034 +
16679624-16679940,16679980-16680199,16680319-16680624,
16680703-16681044,16681066-16681257,16681533-16681684,
16681803-16681974,16682017-16682338,16682414-16682862
Length = 823
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 314 AALGDANGXAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNT 472
AA+G G A A SR ++ R +L H D ++K + +NT
Sbjct: 141 AAVG-GGGAAVSARPASRASVRRNVSDLAAEHSDANDGIPVRKDKANWSARNT 192
>02_02_0331 +
9017291-9019084,9019205-9019402,9020014-9020184,
9020292-9020435,9020552-9020764,9020859-9021929,
9022365-9022391
Length = 1205
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 356 EQSRQNIERTAEELR-KAHPDVEKNATALREKLQAAVQNTVQESHKLAXKVSSNVQXT 526
+QS ERT E + KAH ++ K E +QAA +QE VQ T
Sbjct: 420 KQSDPKKERTVSEAKEKAHDEMNKGRAYGNETVQAASVKQMQEEQFPMSLADQKVQAT 477
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,543,610
Number of Sequences: 37544
Number of extensions: 209731
Number of successful extensions: 824
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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