BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_O10 (589 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosa... 91 1e-19 SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 26 3.5 SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 6.2 SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 6.2 SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 25 8.2 >SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosaccharomyces pombe|chr 2|||Manual Length = 183 Score = 91.1 bits (216), Expect = 1e-19 Identities = 48/168 (28%), Positives = 87/168 (51%) Frame = +3 Query: 54 PYEIEFIGENRIISITPNFTHDKIYLICGEFGPFRAGLPVNVPLWLAIMLKQKQKCHVIP 233 P E+EF+ N I+I P+ T D++ L+ + VPLWLA+ LK++ ++P Sbjct: 13 PEEMEFLAGNEYINIVPSETMDQLPLVSATIPIMKPPKKCRVPLWLALELKKQNLARIVP 72 Query: 234 PDWMDVEVLXNIKXXEKRSXFFTKMPNEHYMVEAKLILGSAAEDVPNAPEXXXXXXXXXX 413 P+WM++ L NI+ E + F+++P ++ A L+L A+D+ + + Sbjct: 73 PEWMEIGKLENIRDDELENETFSELP-FRWLETAHLLLNFCADDIEDVEDIRRILLDIRE 131 Query: 414 XXMSKLRTSMDALMKTGGGYGRLXHLTMMEINSVKPLLPAAMDNLLRM 557 SK RT ++A+ + L +L MEIN ++P+ MD + ++ Sbjct: 132 ARQSKARTGLEAINEV---QLTLDNLGAMEINEIRPIFREVMDRMRKI 176 >SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr 2|||Manual Length = 532 Score = 26.2 bits (55), Expect = 3.5 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = -1 Query: 151 GPNSPHIKYILSWVKFGVILII 86 GP SP + +W+K G++LI+ Sbjct: 15 GPESPSRRNWKTWIKHGILLIL 36 >SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 425 Score = 25.4 bits (53), Expect = 6.2 Identities = 12/42 (28%), Positives = 18/42 (42%) Frame = +2 Query: 341 DTWFSCRRCSQCTRNKDYYQRHLGYXNV*VTNINGCIDENWR 466 +TW S RC+ C D LG+ + N CI ++ Sbjct: 340 NTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNTCISSIYK 381 >SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 475 Score = 25.4 bits (53), Expect = 6.2 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = +3 Query: 75 GENRIISITPNFTHDKI 125 G+ + ++ITPNFTH I Sbjct: 143 GKEKWVTITPNFTHTPI 159 >SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|Schizosaccharomyces pombe|chr 1|||Manual Length = 590 Score = 25.0 bits (52), Expect = 8.2 Identities = 7/16 (43%), Positives = 10/16 (62%) Frame = +2 Query: 428 VTNINGCIDENWRWLW 475 +TN CID+ W +W Sbjct: 81 ITNFGDCIDDEWYIVW 96 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,422,725 Number of Sequences: 5004 Number of extensions: 49723 Number of successful extensions: 123 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 121 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 122 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 254167452 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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