Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O10
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosa...    91   1e-19
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    26   3.5  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   6.2  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   6.2  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    25   8.2  

>SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit
           Psf2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 48/168 (28%), Positives = 87/168 (51%)
 Frame = +3

Query: 54  PYEIEFIGENRIISITPNFTHDKIYLICGEFGPFRAGLPVNVPLWLAIMLKQKQKCHVIP 233
           P E+EF+  N  I+I P+ T D++ L+       +      VPLWLA+ LK++    ++P
Sbjct: 13  PEEMEFLAGNEYINIVPSETMDQLPLVSATIPIMKPPKKCRVPLWLALELKKQNLARIVP 72

Query: 234 PDWMDVEVLXNIKXXEKRSXFFTKMPNEHYMVEAKLILGSAAEDVPNAPEXXXXXXXXXX 413
           P+WM++  L NI+  E  +  F+++P   ++  A L+L   A+D+ +  +          
Sbjct: 73  PEWMEIGKLENIRDDELENETFSELP-FRWLETAHLLLNFCADDIEDVEDIRRILLDIRE 131

Query: 414 XXMSKLRTSMDALMKTGGGYGRLXHLTMMEINSVKPLLPAAMDNLLRM 557
              SK RT ++A+ +       L +L  MEIN ++P+    MD + ++
Sbjct: 132 ARQSKARTGLEAINEV---QLTLDNLGAMEINEIRPIFREVMDRMRKI 176


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 151 GPNSPHIKYILSWVKFGVILII 86
           GP SP  +   +W+K G++LI+
Sbjct: 15  GPESPSRRNWKTWIKHGILLIL 36


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +2

Query: 341 DTWFSCRRCSQCTRNKDYYQRHLGYXNV*VTNINGCIDENWR 466
           +TW S  RC+ C    D     LG+      + N CI   ++
Sbjct: 340 NTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNTCISSIYK 381


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 75  GENRIISITPNFTHDKI 125
           G+ + ++ITPNFTH  I
Sbjct: 143 GKEKWVTITPNFTHTPI 159


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 428 VTNINGCIDENWRWLW 475
           +TN   CID+ W  +W
Sbjct: 81  ITNFGDCIDDEWYIVW 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,725
Number of Sequences: 5004
Number of extensions: 49723
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)