Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O10
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1033 - 8178974-8178982,8179123-8179215,8179311-8179341,817...    79   2e-15
06_03_0532 - 21844213-21844252,21844579-21844836,21845303-218455...    30   1.2  
11_04_0312 - 16259612-16260231,16260264-16262796                       29   3.6  
11_04_0431 + 17687408-17687603,17687772-17688115,17688951-176892...    28   4.8  
09_06_0135 - 21069521-21069646,21069778-21069948,21070438-210705...    28   4.8  
11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239...    28   6.3  
07_03_0722 + 20946201-20947327,20949531-20950791                       28   6.3  
07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708     27   8.4  

>01_01_1033 -
           8178974-8178982,8179123-8179215,8179311-8179341,
           8179434-8179519,8179572-8179624,8180026-8180140,
           8180505-8180579,8180683-8180730
          Length = 169

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 31/67 (46%), Positives = 45/67 (67%)
 Frame = +3

Query: 54  PYEIEFIGENRIISITPNFTHDKIYLICGEFGPFRAGLPVNVPLWLAIMLKQKQKCHVIP 233
           P E+EF+ E+ I+ I PN   + + +ICG+FGPF   +   VPLWLA+ LK++ KC +  
Sbjct: 14  PSEVEFVAEDEIVEIVPNIRMEALNMICGDFGPFFPQIASKVPLWLAVALKKRGKCTIRT 73

Query: 234 PDWMDVE 254
           PDWM V+
Sbjct: 74  PDWMTVD 80


>06_03_0532 -
           21844213-21844252,21844579-21844836,21845303-21845568,
           21845963-21846369,21846528-21847143
          Length = 528

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 420 MSKLRTSMDALMKTGGGYGRLXHLTMMEINSVKPLLPAAMDNLLRMQM 563
           MSK+ T  DA  K    +G + H T   +   +P  PA +  L+R+ +
Sbjct: 43  MSKIHTDHDATTKASSDFGHIVHATPNGV--FRPTFPADIAALIRLSL 88


>11_04_0312 - 16259612-16260231,16260264-16262796
          Length = 1050

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 63  IEFIGENRIIS-ITPNFTHDKIYLICGEFGPFRAGLPVNVPLWLAIMLKQKQKCHVIPPD 239
           +EF   N I+S I      DK++++ G +GP   G  + V   L  M  QK+   VI  D
Sbjct: 186 MEFGSRNEIVSQIINALKEDKVHIV-GVYGPCGIGKSLLVAAILEKMKTQKEFDEVITVD 244

Query: 240 WMDVEVLXNIK 272
             +   L  IK
Sbjct: 245 LREKPGLEEIK 255


>11_04_0431 +
           17687408-17687603,17687772-17688115,17688951-17689287,
           17690012-17690087,17690324-17690351,17691047-17691154
          Length = 362

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 175 FTGKPARNGPNSPH 134
           F G+PARN P+SPH
Sbjct: 255 FLGQPARNDPSSPH 268


>09_06_0135 -
           21069521-21069646,21069778-21069948,21070438-21070524,
           21070607-21070788,21070905-21070983
          Length = 214

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 143 FTAYQVYFIMGKVWCYTDYPILT 75
           F A +V   + K+WCY +Y I T
Sbjct: 60  FIAMEVVDSLAKIWCYEEYSIAT 82


>11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,
            2397417-2397458,2397670-2397723,2397836-2397868,
            2397959-2398039,2398144-2398230,2398313-2398388,
            2398633-2398808,2398912-2399034,2399249-2399361,
            2399521-2399632,2400054-2400273,2401986-2402314,
            2402408-2402713,2403580-2403878,2404079-2404181,
            2404266-2404369,2404840-2404906,2404911-2405076,
            2405241-2405956
          Length = 1157

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 96   ITPNFTHDKIYLICGEFGPFRAGLPVNVPLWLAIMLKQKQKC-HVIPPDWMDVEVL 260
            +T  F  ++    C  F    AG  + + L ++ MLK + KC  V  PD +D E +
Sbjct: 1094 LTSYFISEQAPFNCKGFSFLVAGFFLAISLGISFMLKPEAKCTRVAVPDQLDHEAV 1149


>07_03_0722 + 20946201-20947327,20949531-20950791
          Length = 795

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -3

Query: 365 IFGS*TKYQFGFHHIVFIWHLCEEXGTLFLXFNIXQNFHVHPVRRDNMALLFLL*HDS 192
           +FG   KYQFGF + + + H   E   +F  +   +    + + R  + ++  L HDS
Sbjct: 722 LFGG-KKYQFGFDYQIIVVH--PECNLIFFVYGWDKTLMAYEMDRKEVRVIRNLGHDS 776


>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
          Length = 2033

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 75  GENRIISITPNFTHDKIYLICGEFGPFRAG 164
           G++ ++++ PN+  +     C + GPF+ G
Sbjct: 325 GDHGVLAVVPNWNCNSTDEFCSQLGPFQTG 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,304,426
Number of Sequences: 37544
Number of extensions: 307652
Number of successful extensions: 592
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)