BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_O10 (589 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_14697| Best HMM Match : Psf2 (HMM E-Value=8.7e-08) 51 8e-07 SB_47729| Best HMM Match : ASC (HMM E-Value=1.8e-07) 30 1.2 SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 8.6 SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6 SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6 >SB_14697| Best HMM Match : Psf2 (HMM E-Value=8.7e-08) Length = 323 Score = 50.8 bits (116), Expect = 8e-07 Identities = 24/66 (36%), Positives = 41/66 (62%) Frame = +3 Query: 351 SAAEDVPNAPEXXXXXXXXXXXXMSKLRTSMDALMKTGGGYGRLXHLTMMEINSVKPLLP 530 SAAED+P+A E ++KLR S+D ++ + RL LT+MEIN+++PLL Sbjct: 243 SAAEDIPHADEVRTLVKDIWDLRVAKLRKSVDLMVGQQAVHARLDDLTLMEINTIRPLLT 302 Query: 531 AAMDNL 548 +++++ Sbjct: 303 ESLNHM 308 >SB_47729| Best HMM Match : ASC (HMM E-Value=1.8e-07) Length = 387 Score = 30.3 bits (65), Expect = 1.2 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = +2 Query: 320 LYGGSQTDTWFSCRRCSQCTRNKDYYQRHLGYXNV*VTNINGCIDEN 460 LYG + TD + C ++ +KD+ R+ Y + V N G DE+ Sbjct: 153 LYGHNITDMLWECNFMNKPCSHKDFAMRYTSYSLLVVANTKGNDDED 199 >SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) Length = 3804 Score = 27.5 bits (58), Expect = 8.6 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = +3 Query: 93 SITPNFTHDKIYLICGEFG-PFRAGL 167 S+TPN+ D+ + CG FG P GL Sbjct: 2539 SLTPNYDRDRKFGFCGGFGIPVTRGL 2564 >SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1459 Score = 27.5 bits (58), Expect = 8.6 Identities = 9/28 (32%), Positives = 14/28 (50%) Frame = +2 Query: 323 YGGSQTDTWFSCRRCSQCTRNKDYYQRH 406 Y DTW+ C+ C + + Y+ RH Sbjct: 181 YDVHSPDTWYPCQMCQRKFSSIHYFNRH 208 >SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 788 Score = 27.5 bits (58), Expect = 8.6 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = +2 Query: 350 FSCRRCSQCTRNKDYYQRHLGYXN 421 F C +C Q KD ++RH+ N Sbjct: 523 FQCEKCEQSLNRKDTFKRHMKKYN 546 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,396,390 Number of Sequences: 59808 Number of extensions: 357410 Number of successful extensions: 797 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 740 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 797 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1422302661 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -