Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O10
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14697| Best HMM Match : Psf2 (HMM E-Value=8.7e-08)                  51   8e-07
SB_47729| Best HMM Match : ASC (HMM E-Value=1.8e-07)                   30   1.2  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   8.6  
SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_14697| Best HMM Match : Psf2 (HMM E-Value=8.7e-08)
          Length = 323

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 24/66 (36%), Positives = 41/66 (62%)
 Frame = +3

Query: 351 SAAEDVPNAPEXXXXXXXXXXXXMSKLRTSMDALMKTGGGYGRLXHLTMMEINSVKPLLP 530
           SAAED+P+A E            ++KLR S+D ++     + RL  LT+MEIN+++PLL 
Sbjct: 243 SAAEDIPHADEVRTLVKDIWDLRVAKLRKSVDLMVGQQAVHARLDDLTLMEINTIRPLLT 302

Query: 531 AAMDNL 548
            +++++
Sbjct: 303 ESLNHM 308


>SB_47729| Best HMM Match : ASC (HMM E-Value=1.8e-07)
          Length = 387

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 320 LYGGSQTDTWFSCRRCSQCTRNKDYYQRHLGYXNV*VTNINGCIDEN 460
           LYG + TD  + C   ++   +KD+  R+  Y  + V N  G  DE+
Sbjct: 153 LYGHNITDMLWECNFMNKPCSHKDFAMRYTSYSLLVVANTKGNDDED 199


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 93   SITPNFTHDKIYLICGEFG-PFRAGL 167
            S+TPN+  D+ +  CG FG P   GL
Sbjct: 2539 SLTPNYDRDRKFGFCGGFGIPVTRGL 2564


>SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1459

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 323 YGGSQTDTWFSCRRCSQCTRNKDYYQRH 406
           Y     DTW+ C+ C +   +  Y+ RH
Sbjct: 181 YDVHSPDTWYPCQMCQRKFSSIHYFNRH 208


>SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 788

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 350 FSCRRCSQCTRNKDYYQRHLGYXN 421
           F C +C Q    KD ++RH+   N
Sbjct: 523 FQCEKCEQSLNRKDTFKRHMKKYN 546


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,396,390
Number of Sequences: 59808
Number of extensions: 357410
Number of successful extensions: 797
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)