Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O10
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12530.1 68416.m01559 DNA replication protein-related similar...    87   6e-18
At3g46270.1 68416.m05008 receptor protein kinase-related contain...    30   1.00 
At5g16520.1 68418.m01932 expressed protein                             30   1.3  
At5g03230.1 68418.m00271 expressed protein contains Pfam profile...    29   3.0  
At3g49450.1 68416.m05405 F-box family protein contains F-box dom...    28   4.0  
At3g46280.1 68416.m05009 protein kinase-related contains similar...    28   5.3  
At2g21050.1 68415.m02499 amino acid permease, putative similar t...    28   5.3  
At3g46260.1 68416.m05007 protein kinase-related contains low sim...    27   9.3  

>At3g12530.1 68416.m01559 DNA replication protein-related similar to
           DNA replication protein Psf2 (GI:29365481) [Xenopus
           laevis]; contains Pfam profile PF04128: Domain of
           unknown function (DUF392)
          Length = 191

 Score = 87.4 bits (207), Expect = 6e-18
 Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 1/158 (0%)
 Frame = +3

Query: 72  IGENRIISITPNFTHDKIYLICGEFGPFRAGLPVNVPLWLAIMLKQKQKCHVIPPDWMDV 251
           + E+ ++ I PN   +++  I G+FG F   +P  VPLWLA+ LK++ KC   PP WM V
Sbjct: 1   MAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLAVALKRRGKCTFRPPGWMSV 60

Query: 252 EVLXNIKXXEKRS-XFFTKMPNEHYMVEAKLILGSAAEDVPNAPEXXXXXXXXXXXXMSK 428
           + L  I   E+ S   F  +P   Y+  A+L+   A +D+P+               + K
Sbjct: 61  DNLTQILEAERESQSTFQALPFS-YVEIARLLFDHARDDIPDMYMVRSLVEDIRDVRLHK 119

Query: 429 LRTSMDALMKTGGGYGRLXHLTMMEINSVKPLLPAAMD 542
           L T++ +   T     ++ +++ ME+N V+P +  A++
Sbjct: 120 LETNLGSFQGTSA--VKISNVSAMEVNIVRPFVIRALE 155


>At3g46270.1 68416.m05008 receptor protein kinase-related contains
           weak similarity to light repressible receptor protein
           kinase (GI:1321686) [Arabidopsis thaliana]
          Length = 470

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 125 YFIMGKVWCYTDYPILTNKLDFIRFHYYFYGFNN 24
           YF  G+  CYT+ P+   +   +R  YY+  +++
Sbjct: 76  YFPTGQTNCYTNIPVTKGRKTLVRTKYYYENYDD 109


>At5g16520.1 68418.m01932 expressed protein 
          Length = 608

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 229 ITWHFCFCFSMIASQSGTFTGKPARNGPNSPHIKYILSWVKFGVIL 92
           I+WHF       A+  G      ++NGPN  H+ ++   ++ G IL
Sbjct: 253 ISWHFVDLPDSPAAAVGFQFNFTSKNGPNEKHMSFVSGTLRNGSIL 298


>At5g03230.1 68418.m00271 expressed protein contains Pfam profile
           PF04520: Protein of unknown function, DUF584
          Length = 166

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 165 LPVNVPLWLAIMLKQKQKCHVIPPDWMD 248
           LPVN+P W  I LK + + H IP D  D
Sbjct: 79  LPVNIPDWSKI-LKSEYRGHAIPDDDSD 105


>At3g49450.1 68416.m05405 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 397

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 144 FGPFRAGLPVNVPLWLAIMLKQK--QKCHVIPPDWMDV 251
           FG F  G  V   LW+  ++ Q+  +  HV+PP W DV
Sbjct: 291 FG-FMDGGDVGFELWILDVVNQEWIRSIHVLPPMWKDV 327


>At3g46280.1 68416.m05009 protein kinase-related contains similarity
           to light repressible receptor protein kinase
           [Arabidopsis thaliana] gi|1321686|emb|CAA66376
          Length = 471

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 125 YFIMGKVWCYTDYPILTNKLDFIRFHYYFYGFN 27
           YF  G+  CYT+ P+   +   +R  +Y+  ++
Sbjct: 71  YFPTGQTNCYTNIPVTKGQKTLVRTKFYYENYD 103


>At2g21050.1 68415.m02499 amino acid permease, putative similar to
           AUX1 [Arabidopsis thaliana] GI:1531758; contains Pfam
           profile PF01490: Transmembrane amino acid transporter
           protein
          Length = 483

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 278 GKAFXILHKDAK*TLYGGSQTDTWFSC 358
           GKA  I  K +    +GGS  D WFSC
Sbjct: 23  GKALDIKSKLSDMFWHGGSAYDAWFSC 49


>At3g46260.1 68416.m05007 protein kinase-related contains low
           similarity to light repressible receptor protein kinase
           [Arabidopsis thaliana] gi|1321686|emb|CAA66376
          Length = 434

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 125 YFIMGKVWCYTDYPILTNKLDFIRFHYYFYGFN 27
           YF  G+  CYT+ P    +   +R  +Y+  ++
Sbjct: 75  YFPTGQTNCYTNIPATKGRTTLVRTKFYYKNYD 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,466,121
Number of Sequences: 28952
Number of extensions: 253078
Number of successful extensions: 513
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)