Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O05
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0639 + 23055223-23055678,23055788-23056627                       36   0.028
06_03_0983 - 26559772-26559915,26560149-26560251,26560335-265605...    31   1.1  
04_04_0559 - 26234106-26235169,26235437-26235452                       31   1.1  
02_01_0577 + 4280590-4281225,4281749-4282102,4282214-4282412,428...    29   3.3  
03_05_1069 + 30118930-30120120                                         29   4.3  
03_02_0482 + 8798931-8799024,8799118-8799253,8799435-8799506,879...    28   7.5  

>06_03_0639 + 23055223-23055678,23055788-23056627
          Length = 431

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
 Frame = -3

Query: 300 PSVATALIMVGEPRRSHPSPAVVSAMDVRIIPLHRSASSNRTPLXSDI----LVLEILFD 133
           P  A  +  VGE  R   +PA+  A     IP   SA+    P+ +++    L ++I  D
Sbjct: 175 PGAAQFMTAVGEIARGRAAPALAPAWGRDAIPCPPSAAVGPLPVPTELRLQYLAMDISTD 234

Query: 132 LVHIFYTRIL-*TNKQCASFNVTIA 61
            +  F  R L  T  +C++F V IA
Sbjct: 235 YIDHFKARFLEQTGHRCSAFEVLIA 259


>06_03_0983 -
           26559772-26559915,26560149-26560251,26560335-26560548,
           26563352-26563550,26564509-26564862,26565430-26566086
          Length = 556

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 486 LLSWGTGAL-TFRQGEDFXNRIAWYFKRQXFKSGEVIALFMETQPEYIFVWLGLAKM 653
           L+   TGA+ ++ + E+   R A   +R     G+V+   +   PE+ F +LG A++
Sbjct: 48  LIDGQTGAVYSYGEVEELSRRAAAGLRRLGVGKGDVVMSLLRNCPEFAFTFLGAARL 104


>04_04_0559 - 26234106-26235169,26235437-26235452
          Length = 359

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 143 ISSTRMSXKRGVRFEEAERCKGIILTSIALTTAGLGWLLRGSPTMMSAVA 292
           +SS ++  K G   E+  R  GI+   + L+T  L WL+  S T  S  A
Sbjct: 10  VSSNQLDDKDGREEEQVVRGLGILPAQLELSTKELPWLVGDSATQRSRFA 59


>02_01_0577 +
           4280590-4281225,4281749-4282102,4282214-4282412,
           4284991-4285204,4285299-4285401,4285481-4285639
          Length = 554

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 486 LLSWGTG-ALTFRQGEDFXNRIAWYFKRQXFKSGEVIALFMETQPEYIFVWLGLAKM 653
           L+   TG + T+ + E    R A   +R     G+V+   +   PE+ F +LG A++
Sbjct: 44  LIDGQTGESYTYAEVESASRRAAAGLRRMGVGKGDVVMSLLRNCPEFAFSFLGAARL 100


>03_05_1069 + 30118930-30120120
          Length = 396

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 248 GWLLRGSPTMMSAVATLGAYLLTGDRYQWIYLWKK 352
           G +LRG    +  +A  G+ LL+G     IY+W++
Sbjct: 259 GGVLRGHKKAVFCLAAAGSLLLSGSADNTIYVWRR 293


>03_02_0482 +
           8798931-8799024,8799118-8799253,8799435-8799506,
           8799583-8799654,8799798-8799869,8800133-8800204,
           8800530-8800627,8800892-8801062,8801141-8801473,
           8802494-8802739,8802884-8803017,8803132-8803344
          Length = 570

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 275 MMSAVATLGAYLLTGDRYQW-IYLWKKTHKRDFLXLRVLL 391
           ++SAVAT+GA LL      W  +L+K   K+D    RV L
Sbjct: 221 VISAVATVGALLLVALMCFWGCFLYKNFGKKDIHGFRVEL 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,901,069
Number of Sequences: 37544
Number of extensions: 302000
Number of successful extensions: 761
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)