Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O05
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33495| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   1e-10
SB_36835| Best HMM Match : AMP-binding (HMM E-Value=6.2e-13)           29   3.3  
SB_11522| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_33495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 25/47 (53%), Positives = 37/47 (78%)
 Frame = +3

Query: 513 TFRQGEDFXNRIAWYFKRQXFKSGEVIALFMETQPEYIFVWLGLAKM 653
           TF++ ++F NRIA YFK Q +  G+VIAL +E +PE+I +WLGL+K+
Sbjct: 111 TFKEADEFANRIANYFKSQGYAKGDVIALILENRPEFILIWLGLSKI 157


>SB_36835| Best HMM Match : AMP-binding (HMM E-Value=6.2e-13)
          Length = 874

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 513 TFRQGEDFXNRIAWYFKRQXFKSGEVIALFMETQPEYIFVW 635
           T+ + +D  +++A    R+ FK GEV+A+     PE+   +
Sbjct: 45  TYPELKDLIHKMASALTRKGFKQGEVLAIMCPNIPEFAIAY 85


>SB_11522| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = +2

Query: 212 ILTSIALTTAGLGWLLRGSPTMMSAVATLGAYLLTGDRYQWI----YLWKKTHKRDFLXL 379
           IL  +    A    L++  P ++SA    G  + T   Y  +    Y+ +KT K   L L
Sbjct: 169 ILVDLPTLEARKAMLMQNLPPVISASDGKGVEIRTEIDYDMLAKRFYMGRKTEKLKQLRL 228

Query: 380 RVLLATMFXIWRWEKQXQS 436
            + L T   +WR + + +S
Sbjct: 229 WIQLDTYSTVWRKQTKQKS 247


>SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 233  TTAGLGWLLRGSPTMMSAVATLGAYLLTGDRYQ 331
            +T GLGW+L    T     AT   +L+ G  YQ
Sbjct: 1380 STGGLGWILPPRDTAAPREATPDRFLVYGHNYQ 1412


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,447,812
Number of Sequences: 59808
Number of extensions: 341046
Number of successful extensions: 745
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)