Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O05
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.9  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   7.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +2

Query: 320 DRYQWIYLWKKTHKRDFLXLRVLLATMFXIWRWEKQXQSVVSXWAEIAXLYPEXKAFIMG 499
           D++ W+Y WK+      L    ++A +   + + K  Q V++ W   +  Y +   + MG
Sbjct: 625 DQWNWVYEWKE------LIPSHIMAGLLDKFFFPKWLQ-VLALWLNHSPNYDQVTNWYMG 677

Query: 500 DRG 508
            +G
Sbjct: 678 WKG 680


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 159 ILVLEILFDLVHIFYT 112
           IL L +LF+ +HI Y+
Sbjct: 6   ILTLGVLFNTLHIIYS 21


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 152 TRMSXKRGVRFEEAERCKGII 214
           T M  K G+RFEE     GI+
Sbjct: 51  TFMCHKYGLRFEEVSEKYGIL 71


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = -3

Query: 297 SVATALIMVGEPRRSHPSPAVVSAMDVRIIPLHRSASSNRTPLXSDILVLEILFDLVHIF 118
           ++A  + M   PRR  P  A    +      LHR+A  + + L    L+  +  D+ +  
Sbjct: 100 TIAVCVCMRKCPRRHRPVCASNGKIYANHCELHRAACHSGSSLTKSRLMRCLHHDIENAH 159

Query: 117 YTRIL*TNK 91
             R L  N+
Sbjct: 160 IRRTLHMNR 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,428
Number of Sequences: 438
Number of extensions: 2955
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)