BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_O03 (629 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 214 1e-56 SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 211 5e-56 SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 38 0.002 SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.55 SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 27 2.2 SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 26 3.9 SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 5.2 SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 25 6.8 SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 6.8 SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 25 9.0 SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 9.0 >SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccharomyces pombe|chr 1|||Manual Length = 203 Score = 214 bits (522), Expect = 1e-56 Identities = 111/173 (64%), Positives = 135/173 (78%) Frame = +1 Query: 109 AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 288 A S++ + +SL + IKLF ++ V+V D+SL DYI++ + LPH+AGR+ Sbjct: 2 AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56 Query: 289 HKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAII 468 KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ Sbjct: 57 TKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVA 116 Query: 469 NSGPREXSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIA 627 GPRE STRIG AGTVRRQAVDVSPLRRVNQA+ L+ GAREAAFRN+K+I+ Sbjct: 117 ACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSIS 169 >SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces pombe|chr 1|||Manual Length = 203 Score = 211 bits (516), Expect = 5e-56 Identities = 111/169 (65%), Positives = 131/169 (77%), Gaps = 3/169 (1%) Frame = +1 Query: 130 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 300 T SL + E IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRF Sbjct: 3 TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRF 60 Query: 301 RKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 480 RKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ GP Sbjct: 61 RKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGP 120 Query: 481 REXSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIA 627 RE STRIG AGTVRRQAVDVSPLRRVNQA+ L+ GAREAAFRN+K+I+ Sbjct: 121 REDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSIS 169 >SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schizosaccharomyces pombe|chr 1|||Manual Length = 259 Score = 37.5 bits (83), Expect = 0.002 Identities = 23/53 (43%), Positives = 28/53 (52%) Frame = +1 Query: 322 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 480 V+ L N +M +GKK A +IV A II TGENP+ VL AI P Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174 >SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 468 Score = 29.1 bits (62), Expect = 0.55 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +3 Query: 381 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 479 G TYC C L+NW K S S C +L+T Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128 >SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 27.1 bits (57), Expect = 2.2 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +1 Query: 145 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 288 + ADI + FGR ++++++ + I+V+EKYAK P R A Sbjct: 7 KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50 >SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosaccharomyces pombe|chr 2|||Manual Length = 933 Score = 26.2 bits (55), Expect = 3.9 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +2 Query: 473 LDPVXIRLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQV 589 ++PV R SVV V +P+ +H +S ++G Q+ Sbjct: 273 IEPVSSRQSSVVNNNSVQQPVAYHAFVQSPTENGTLPQL 311 >SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces pombe|chr 1|||Manual Length = 674 Score = 25.8 bits (54), Expect = 5.2 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +3 Query: 330 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 452 PYK+ + + W + G+TY + + + L R+ +AST Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177 >SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual Length = 613 Score = 25.4 bits (53), Expect = 6.8 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = -2 Query: 307 LYGNACVHTCQLNEVNILRTSL*RKCSPAETYQRLAHRSNSICRKA*FQECRRL 146 L N C+ LNE ++ + SL R P++ ++ R +S+ +K+ E R L Sbjct: 147 LLNNCCIGIANLNEDSVHKISLTRSGKPSQLV-TVSCRHSSVIQKSYGSEKRYL 199 >SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Spt6|Schizosaccharomyces pombe|chr 1|||Manual Length = 1365 Score = 25.4 bits (53), Expect = 6.8 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 409 EIIHLLTGENPLQVLVTAIINSGPREXSTR 498 EI +LTGENP ++ AI+ R + R Sbjct: 1034 EIFLMLTGENPEELQADAIVPVNVRRVTNR 1063 >SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 131 Score = 25.0 bits (52), Expect = 9.0 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +2 Query: 134 CLYHKPPTFLKSSFS 178 C H P TFL SSFS Sbjct: 117 CFIHPPITFLSSSFS 131 >SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1158 Score = 25.0 bits (52), Expect = 9.0 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = +1 Query: 280 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIH 420 +Y KR A+ +V R H R N KL + + H F ++H Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,639,123 Number of Sequences: 5004 Number of extensions: 53587 Number of successful extensions: 131 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 129 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 279695522 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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