Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_O03
(629 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0) 295 2e-80
SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24) 29 2.4
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14) 28 5.4
SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39) 27 9.5
SB_49072| Best HMM Match : rve (HMM E-Value=2.7e-29) 27 9.5
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 27 9.5
SB_47964| Best HMM Match : Abi_HHR (HMM E-Value=5) 27 9.5
SB_37298| Best HMM Match : rve (HMM E-Value=2.7e-29) 27 9.5
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 27 9.5
SB_49679| Best HMM Match : rve (HMM E-Value=8.4e-27) 27 9.5
SB_44757| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_33948| Best HMM Match : rve (HMM E-Value=2.8e-29) 27 9.5
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 27 9.5
SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_3471| Best HMM Match : rve (HMM E-Value=2.7e-29) 27 9.5
SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
Length = 272
Score = 295 bits (724), Expect = 2e-80
Identities = 139/170 (81%), Positives = 155/170 (91%)
Frame = +1
Query: 118 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKR 297
VV + + A ++P+IKLFG+WS DVQVSD+SL DYI+VKEKY+ YLPH+AGRYA KR
Sbjct: 69 VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAGRYAAKR 128
Query: 298 FRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSG 477
FRKAQCPIVER+TNS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPLQVLV AIINSG
Sbjct: 129 FRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQVLVNAIINSG 188
Query: 478 PREXSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIA 627
PRE STRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARE+AFRNIK+IA
Sbjct: 189 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARESAFRNIKSIA 238
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1
Query: 118 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSL 222
VV + + A ++P+IKLFG+WS DVQVSD+SL
Sbjct: 6 VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISL 40
>SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24)
Length = 553
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +2
Query: 26 TVRGYNFYLVIEKYQSWPR--RTGMTTXPR 109
+V G NF++V++ + WP T TT P+
Sbjct: 242 SVHGVNFFVVVDAHSKWPEIIATSSTTAPK 271
>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
Length = 556
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 157 IPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 288
IPE L C DV + LQ+++ + +KY YL + A +Y+
Sbjct: 511 IPEEAL--NLECPDVDFRESVLQEFLLLDKKYESYLEYLALKYS 552
>SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39)
Length = 1311
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 35 GYNFYLVIEKYQSWPR--RTGMTTXPR 109
G NF++V++ + WP T TT P+
Sbjct: 867 GVNFFVVVDAHSKWPEIIATSSTTAPK 893
>SB_49072| Best HMM Match : rve (HMM E-Value=2.7e-29)
Length = 307
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 35 GYNFYLVIEKYQSWPR--RTGMTTXPR 109
G NF++V++ + WP T TT P+
Sbjct: 137 GVNFFVVVDAHSKWPEIIATSSTTAPK 163
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 35 GYNFYLVIEKYQSWPR--RTGMTTXPR 109
G NF++V++ + WP T TT P+
Sbjct: 951 GVNFFVVVDAHSKWPEIIATSSTTAPK 977
>SB_47964| Best HMM Match : Abi_HHR (HMM E-Value=5)
Length = 275
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 35 GYNFYLVIEKYQSWPR--RTGMTTXPR 109
G NF++V++ + WP T TT P+
Sbjct: 212 GVNFFVVVDAHSKWPEIIATSSTTAPK 238
>SB_37298| Best HMM Match : rve (HMM E-Value=2.7e-29)
Length = 350
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 35 GYNFYLVIEKYQSWPR--RTGMTTXPR 109
G NF++V++ + WP T TT P+
Sbjct: 42 GVNFFVVVDAHSKWPEIIATSSTTAPK 68
>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 1425
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 35 GYNFYLVIEKYQSWPR--RTGMTTXPR 109
G NF++V++ + WP T TT P+
Sbjct: 350 GVNFFVVVDAHSKWPEIIATSSTTAPK 376
>SB_49679| Best HMM Match : rve (HMM E-Value=8.4e-27)
Length = 212
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 35 GYNFYLVIEKYQSWPR--RTGMTTXPR 109
G NF++V++ + WP T TT P+
Sbjct: 42 GVNFFVVVDAHSKWPEIIATSSTTAPK 68
>SB_44757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 35 GYNFYLVIEKYQSWPR--RTGMTTXPR 109
G NF++V++ + WP T TT P+
Sbjct: 734 GVNFFVVVDAHSKWPEIIATSSTTAPK 760
>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1503
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +2
Query: 68 QSWPRRTGMTTXPRQAAWLWKPCLYHKPPTFLKSSFSADGVATMCKSLICLCRTTFPLK 244
++WP T + T +A W W Y TFL ++ C ++ R T+P K
Sbjct: 706 EAWPEPTPLITSALRADWTWLGRRYGLATTFLI-------ISLWCLFILAKDRRTYPRK 757
>SB_33948| Best HMM Match : rve (HMM E-Value=2.8e-29)
Length = 361
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 35 GYNFYLVIEKYQSWPR--RTGMTTXPR 109
G NF++V++ + WP T TT P+
Sbjct: 191 GVNFFVVVDAHSKWPEIFATSSTTAPK 217
>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 1750
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 35 GYNFYLVIEKYQSWPR--RTGMTTXPR 109
G NF++V++ + WP T TT P+
Sbjct: 990 GVNFFVVVDAHSKWPEIIATSSTTAPK 1016
>SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
Frame = +1
Query: 55 NRKVPIMAEENWNDDVXEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYI 234
+R+ + E+ W+ + G + T P + +L WS V D ++ ++I
Sbjct: 619 DRQQRVRIEDEWSSQISPRGGIPQGTRLAPLLFAVLVNRLADEWSTRLKYVDDATVLEFI 678
Query: 235 SVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKL 378
Y + RYA +R + + + + +G KL
Sbjct: 679 PRNSPSYLPIVASGISRYATQRNMRLNPNKCKEMVIDFLHYGEQQKHKL 727
>SB_3471| Best HMM Match : rve (HMM E-Value=2.7e-29)
Length = 212
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 35 GYNFYLVIEKYQSWPR--RTGMTTXPR 109
G NF++V++ + WP T TT P+
Sbjct: 42 GVNFFVVVDAHSKWPEIIATSSTTAPK 68
>SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 35 GYNFYLVIEKYQSWPR--RTGMTTXPR 109
G NF++V++ + WP T TT P+
Sbjct: 1211 GVNFFVVVDAHSKWPEIIATSSTTAPK 1237
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,584,554
Number of Sequences: 59808
Number of extensions: 433948
Number of successful extensions: 1087
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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