Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O01
         (593 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8MR16 Cluster: LD42289p; n=8; Endopterygota|Rep: LD422...    68   2e-10
UniRef50_Q9NXW9 Cluster: Alkylated DNA repair protein alkB homol...    45   0.002
UniRef50_A7RM95 Cluster: Predicted protein; n=1; Nematostella ve...    39   0.077
UniRef50_Q29NC8 Cluster: GA15101-PA; n=1; Drosophila pseudoobscu...    38   0.18 
UniRef50_Q502B6 Cluster: LOC553475 protein; n=4; Danio rerio|Rep...    37   0.31 
UniRef50_Q4SEN1 Cluster: Chromosome undetermined SCAF14615, whol...    36   0.72 
UniRef50_Q8MNT9 Cluster: Putative uncharacterized protein; n=3; ...    36   0.72 
UniRef50_A5BLW8 Cluster: Putative uncharacterized protein; n=1; ...    36   0.95 

>UniRef50_Q8MR16 Cluster: LD42289p; n=8; Endopterygota|Rep: LD42289p
           - Drosophila melanogaster (Fruit fly)
          Length = 310

 Score = 67.7 bits (158), Expect = 2e-10
 Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 3/128 (2%)
 Frame = +1

Query: 199 RPCGCKGCRTCLICETQYGAAXXXXXXXXXXXXSYVYCPYCNKACKGWDINS-YKEHPNH 375
           RPCGCKG RTCL CE  +  A            ++ YC  C+   +GWD N   K+H NH
Sbjct: 11  RPCGCKGVRTCLSCEQDFHIAKTSLREQFQQLEAWSYCIQCDLLQRGWDTNHVQKDHENH 70

Query: 376 -HGEPLSYRGVYIHLDFISELE-QQILIDTXTKYLGITHXVAXGTQLWT*SQLQKEKNRF 549
              E L   G+ +  +F+S  E  Q++ D       I+            +  +K K R 
Sbjct: 71  KKDEGLPLPGILVQEEFLSVDEGAQLIADLDDLPWDISQSGRRKQNFGPKTNFKKRKLRL 130

Query: 550 REFRGFSK 573
             F GF +
Sbjct: 131 GSFAGFPR 138


>UniRef50_Q9NXW9 Cluster: Alkylated DNA repair protein alkB homolog
           4; n=17; Tetrapoda|Rep: Alkylated DNA repair protein
           alkB homolog 4 - Homo sapiens (Human)
          Length = 302

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 27/85 (31%), Positives = 40/85 (47%)
 Frame = +1

Query: 199 RPCGCKGCRTCLICETQYGAAXXXXXXXXXXXXSYVYCPYCNKACKGWDINSYKEHPNHH 378
           R CGCKG RTCLICE Q G +             ++YC     +  GW + +  E  +  
Sbjct: 13  RECGCKGIRTCLICERQRG-SDPPWELPPAKTYRFIYC-----SDTGWAVGT--EESDFE 64

Query: 379 GEPLSYRGVYIHLDFISELEQQILI 453
           G    + GV +  DF++  E+  L+
Sbjct: 65  GWAFPFPGVMLIEDFVTREEEAELV 89



 Score = 36.7 bits (81), Expect = 0.41
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +2

Query: 497 KEXNYGPKVNFKKKKIVSGNFEGFPSF 577
           ++ +YGPKVNF+K+K+ +  F G PSF
Sbjct: 105 RKQDYGPKVNFRKQKLKTEGFCGLPSF 131


>UniRef50_A7RM95 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 267

 Score = 39.1 bits (87), Expect = 0.077
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +2

Query: 497 KEXNYGPKVNFKKKKIVSGNFEGFPSF 577
           ++ +YGP+VNFKKKK+   +F G P+F
Sbjct: 101 RKQDYGPQVNFKKKKVKMSHFNGLPAF 127



 Score = 33.1 bits (72), Expect = 5.0
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 2/128 (1%)
 Frame = +1

Query: 205 CGCKGCRTCLICETQYGAAXXXXXXXXXXXXSYVYCPYCNKACK-GWDINSYKEHPNHHG 381
           CGC G R+CL C+                   Y++C  C++    G   +        +G
Sbjct: 5   CGCTGIRSCLFCKDN-TKTSQSTTSVDEAKTKYLFCHLCSQTLPLGGTCSHELGDCGRYG 63

Query: 382 EPLSYRGVYIHLDFISELEQQILIDTXTKYLGITHXVAXGTQLWT*S-QLQKEKNRFREF 558
             L   G+ +  DF+S+ E+  ++    + +          Q +      +K+K +   F
Sbjct: 64  PSLD--GITLIEDFVSQREEARIVQVIDETVWKPSQSGRRKQDYGPQVNFKKKKVKMSHF 121

Query: 559 RGFSKFSK 582
            G   FS+
Sbjct: 122 NGLPAFSE 129


>UniRef50_Q29NC8 Cluster: GA15101-PA; n=1; Drosophila
           pseudoobscura|Rep: GA15101-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 94

 Score = 37.9 bits (84), Expect = 0.18
 Identities = 14/21 (66%), Positives = 15/21 (71%)
 Frame = +1

Query: 199 RPCGCKGCRTCLICETQYGAA 261
           RPCGCKG RTCL CE  +  A
Sbjct: 6   RPCGCKGVRTCLSCEKDFQIA 26


>UniRef50_Q502B6 Cluster: LOC553475 protein; n=4; Danio rerio|Rep:
           LOC553475 protein - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 276

 Score = 37.1 bits (82), Expect = 0.31
 Identities = 24/83 (28%), Positives = 35/83 (42%)
 Frame = +1

Query: 205 CGCKGCRTCLICETQYGAAXXXXXXXXXXXXSYVYCPYCNKACKGWDINSYKEHPNHHGE 384
           CGCKG RTCL CET  G               ++Y P    A         +E      +
Sbjct: 13  CGCKGIRTCLRCETD-GTKQHLLQNNELIHYDFIYDPVLKSA--------VREEEGSTPQ 63

Query: 385 PLSYRGVYIHLDFISELEQQILI 453
              + GV +  +F+SE E++ L+
Sbjct: 64  CFEFPGVLLWENFVSEDEERELV 86



 Score = 35.9 bits (79), Expect = 0.72
 Identities = 12/26 (46%), Positives = 21/26 (80%)
 Frame = +2

Query: 497 KEXNYGPKVNFKKKKIVSGNFEGFPS 574
           ++ ++GPKVNFKK+++  G+F G P+
Sbjct: 102 RKQDFGPKVNFKKRRVHVGSFSGLPA 127


>UniRef50_Q4SEN1 Cluster: Chromosome undetermined SCAF14615, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF14615,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 917

 Score = 35.9 bits (79), Expect = 0.72
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +2

Query: 497 KEXNYGPKVNFKKKKIVSGNFEGFP 571
           ++ ++GPKVNFKK+++  G F G P
Sbjct: 79  RKQDFGPKVNFKKRRVCLGGFSGLP 103


>UniRef50_Q8MNT9 Cluster: Putative uncharacterized protein; n=3;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 291

 Score = 35.9 bits (79), Expect = 0.72
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 497 KEXNYGPKVNFKKKKIVSGNFEGFPSF 577
           ++ +YGPKVNFK KK+ +  F G P +
Sbjct: 118 RKQDYGPKVNFKHKKVKTDTFVGMPEY 144


>UniRef50_A5BLW8 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 254

 Score = 35.5 bits (78), Expect = 0.95
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 301 YVYCPYCNKACKGWDINSYKEH--PNHHGEPLS 393
           Y+ C +CN+ C GW +N  K H    HHG P +
Sbjct: 123 YLRCKFCNQRCMGW-VNRLKHHLVGTHHGLPFN 154


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 508,779,214
Number of Sequences: 1657284
Number of extensions: 8887643
Number of successful extensions: 20527
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20520
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41488046300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)