Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O01
         (593 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    25   0.64 
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   5.9  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    21   5.9  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 361 EHPNHHGEPLSYRGVYIHLDFISELEQQIL 450
           E+P     PLS++ +  HL+ IS++    L
Sbjct: 31  ENPPPEDTPLSFKNIESHLNAISQITNSTL 60


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 411 NIDAAITQRFPVMVRMFFVRIDVPSFAGFV 322
           NI  A  QR+ ++     VRI+  + A FV
Sbjct: 186 NIALAFKQRYQLINEQMAVRINPKNCASFV 215


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 506 NYGPKVNFKKKKIV 547
           NYG  +N KK+ +V
Sbjct: 155 NYGSSINMKKRFVV 168


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,890
Number of Sequences: 336
Number of extensions: 2408
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)