Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O01
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    28   1.2  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    27   2.1  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    26   3.6  

>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 310 CPYCNKACKGWDI-NSYKEHPNHHGEPLSYR 399
           C Y +   + WDI N  K HP + G+P+SY+
Sbjct: 515 CDYNSDTSRTWDICNPNKLHP-YSGKPVSYK 544


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 299 VTSTVRIATKPAKDGTSILTKNIRTITGN 385
           VTS++ I +KP+K G+ +   NI   +G+
Sbjct: 283 VTSSISIVSKPSKKGSKLKISNITLRSGS 311


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 307 YCPYCNKACKGWDINSYKEHPN 372
           Y PY N + + W+  SY++ P+
Sbjct: 258 YTPYLNDSSEAWEKESYEKSPS 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,374
Number of Sequences: 5004
Number of extensions: 40255
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)