BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_O01 (593 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 28 1.2 SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 27 2.1 SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 26 3.6 >SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr 1|||Manual Length = 712 Score = 27.9 bits (59), Expect = 1.2 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = +1 Query: 310 CPYCNKACKGWDI-NSYKEHPNHHGEPLSYR 399 C Y + + WDI N K HP + G+P+SY+ Sbjct: 515 CDYNSDTSRTWDICNPNKLHP-YSGKPVSYK 544 >SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual Length = 613 Score = 27.1 bits (57), Expect = 2.1 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +2 Query: 299 VTSTVRIATKPAKDGTSILTKNIRTITGN 385 VTS++ I +KP+K G+ + NI +G+ Sbjct: 283 VTSSISIVSKPSKKGSKLKISNITLRSGS 311 >SPBC25H2.15 |||programmed cell death protein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 396 Score = 26.2 bits (55), Expect = 3.6 Identities = 8/22 (36%), Positives = 14/22 (63%) Frame = +1 Query: 307 YCPYCNKACKGWDINSYKEHPN 372 Y PY N + + W+ SY++ P+ Sbjct: 258 YTPYLNDSSEAWEKESYEKSPS 279 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,190,374 Number of Sequences: 5004 Number of extensions: 40255 Number of successful extensions: 108 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 108 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 258201856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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