Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O01
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0590 + 22574985-22578018,22578125-22578469,22579171-225792...    32   0.40 
03_02_0573 - 9571040-9571234,9571352-9571444,9571735-9571818,957...    29   3.7  
04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571     28   6.5  

>06_03_0590 +
           22574985-22578018,22578125-22578469,22579171-22579217,
           22579450-22579573,22579622-22579686
          Length = 1204

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = -2

Query: 361 LCKN*CPILCRLCCNTDSRRNFFLCLVPTAISGLQHRIVFHRSNTSYNLCS 209
           LC   C IL  +C  T+  R   LC   + +SG   R +   SNTS N CS
Sbjct: 17  LCTFFCSILLAICNETEYDRQALLCF-KSQLSG-PSRALSSWSNTSLNFCS 65


>03_02_0573 -
           9571040-9571234,9571352-9571444,9571735-9571818,
           9572401-9572480,9572609-9572759,9573067-9573579
          Length = 371

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -3

Query: 429 AYKVQVNIDAAITQRFPVMVRMFFVRIDVPSFAGFVAIRTVD 304
           A  V V+  AA ++R PV VR   +R+ V   AGFV    VD
Sbjct: 84  ASSVVVSAAAAASRRLPVGVRKPPLRVVVTGGAGFVGSHLVD 125


>04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571
          Length = 740

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 247 VFHRSNTSYNLCSRKVSVSFWITQSCTIELREYDTKY 137
           V H ++  YN C R  SV  WI    +   R+Y  ++
Sbjct: 56  VSHLNDRCYNFCVRDKSVGLWIYNLRSYICRDYHMRF 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,384,993
Number of Sequences: 37544
Number of extensions: 239896
Number of successful extensions: 491
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)