Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O01
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57673| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_14620| Best HMM Match : RVT_1 (HMM E-Value=0.0026)                  28   4.9  
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_4928| Best HMM Match : DUF590 (HMM E-Value=0)                       27   8.6  

>SB_57673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 508

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +2

Query: 497 KEXNYGPKVNFKKKKIVSGNFEGFPSF 577
           ++ +YGP+VNFKKKK+   +F G P+F
Sbjct: 112 RKQDYGPQVNFKKKKVKMSHFNGLPAF 138



 Score = 33.1 bits (72), Expect = 0.17
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 2/128 (1%)
 Frame = +1

Query: 205 CGCKGCRTCLICETQYGAAXXXXXXXXXXXXSYVYCPYCNKACK-GWDINSYKEHPNHHG 381
           CGC G R+CL C+                   Y++C  C++    G   +        +G
Sbjct: 16  CGCTGIRSCLFCKDN-TKTSQSTTSVDEAKTKYLFCHLCSQTLPLGGTCSHELGDCGRYG 74

Query: 382 EPLSYRGVYIHLDFISELEQQILIDTXTKYLGITHXVAXGTQLWT*S-QLQKEKNRFREF 558
             L   G+ +  DF+S+ E+  ++    + +          Q +      +K+K +   F
Sbjct: 75  PSLD--GITLIEDFVSQREEARIVQVIDETVWKPSQSGRRKQDYGPQVNFKKKKVKMSHF 132

Query: 559 RGFSKFSK 582
            G   FS+
Sbjct: 133 NGLPAFSE 140


>SB_14620| Best HMM Match : RVT_1 (HMM E-Value=0.0026)
          Length = 266

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +3

Query: 348 QFLQRTSEPSRGTVELSRRLYSLGLYKRVGTANLNRYIXEIPWDNSXSGXRNXTMDLK 521
           Q+   T+   R +  + R    +G Y+R   A LN    E  W  S  G     +D+K
Sbjct: 183 QYADDTTLLLRDSYSIRRAFALIGTYERASGAKLNATKSEGLWIGSSRGSDQTPVDIK 240


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 262  LQHRIVFHRSNTSYNLCSRKVSVSFWI 182
            LQH  +FH S+   N CS+  S+S WI
Sbjct: 1150 LQH--LFHESDPILNSCSKPHSLSIWI 1174


>SB_4928| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 897

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 301 YVYCPYCNKACKGWDI 348
           ++ CP C+K C  WD+
Sbjct: 338 WIMCPLCDKQCSYWDL 353


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,271,742
Number of Sequences: 59808
Number of extensions: 305203
Number of successful extensions: 653
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)