Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_O01
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18180.1 68414.m02260 expressed protein                             30   1.3  
At3g57950.1 68416.m06459 expressed protein hypothetical protein ...    27   7.1  

>At1g18180.1 68414.m02260 expressed protein
          Length = 292

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +1

Query: 298 SYVYCPYCNKACKGWDIN--SYKEHPNHHGEPLSYRGVYI-HLDFISELEQQILI 453
           S+  CP  NK  K  D+    Y  HPN+ GE L + G+Y+  L  +  LE  ++I
Sbjct: 161 SFKKCPE-NKG-KWCDVGVWKYSRHPNYFGEMLLWWGLYVASLPVLKGLEYLVII 213


>At3g57950.1 68416.m06459 expressed protein hypothetical protein
           T24P15.9 - Arabidopsis thaliana, PIR:T00927; expression
           supported by MPSS
          Length = 181

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 319 NTDSRRNFFLCLVPTAISGLQHRIVFHRSNTSYNLCSRKV 200
           N+++++   + L PT  S  Q +I F      YN CS  V
Sbjct: 54  NSNNKKRKLMMLFPTKASKNQRKIFFGSFRLHYNWCSSHV 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,173,514
Number of Sequences: 28952
Number of extensions: 202429
Number of successful extensions: 442
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)