Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N21
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)              198   3e-51
SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)                 28   5.7  

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score =  198 bits (483), Expect = 3e-51
 Identities = 92/137 (67%), Positives = 111/137 (81%), Gaps = 2/137 (1%)
 Frame = -1

Query: 651 RYSREPDNPAKSCKAXGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRR 472
           RY+ +P+NP KSCKA GSNLRVH+KNT+E AMAI+ M +R+A RYLK+V  KK+ +PFR+
Sbjct: 3   RYATDPENPTKSCKARGSNLRVHYKNTHEAAMAIKGMHVRKANRYLKDVCAKKQLVPFRK 62

Query: 471 FNGGVGRCAQAKQFGT--TQGRWPKKSAEFLLQLLRNXESNADNKTLDVDRXVIDHIQVN 298
           +NGGVGR AQAK      +QGRWPKKSAE LLQLL+N ESNA+ K LDVD  V++HIQVN
Sbjct: 63  YNGGVGRKAQAKNLKVPGSQGRWPKKSAEILLQLLKNAESNAEFKGLDVDSLVVEHIQVN 122

Query: 297 RAPCLRRRTYRXHGRIN 247
            AP +RRRTYR HGRIN
Sbjct: 123 EAPSMRRRTYRAHGRIN 139


>SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)
          Length = 471

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -1

Query: 441 AKQFGTTQGRWPKKSAEFLLQLLRNXESNADNKTLDVDRXVIDHIQVNRAPCLRRRTYR 265
           AKQ    +G WP     FL+  + N     D  +      +   IQ N+  C++++ Y+
Sbjct: 202 AKQTCVVEGAWPLVENHFLIVQVTNVPL-VDGSSATATNKITVIIQENKDSCVQQKIYK 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,623,897
Number of Sequences: 59808
Number of extensions: 301792
Number of successful extensions: 754
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)