Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N21
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   236   1e-62
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   128   4e-30
U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical pr...    29   3.8  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  236 bits (577), Expect = 1e-62
 Identities = 111/163 (68%), Positives = 129/163 (79%)
 Frame = -1

Query: 648 YSREPDNPAKSCKAXGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 469
           YSR P+N  KSCKA GS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 468 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNXESNADNKTLDVDRXVIDHIQVNRAP 289
           +GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+N ESNA+ K LDVD  VI+HI V RA 
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 125

Query: 288 CLRRRTYRXHGRINPYMXXPCHIEVCXSEREDAVARVAPTDDA 160
            LRRRTYR HGRINPYM  PCHIEV  +E+ED V++  PTDDA
Sbjct: 126 KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK--PTDDA 166


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  128 bits (308), Expect = 4e-30
 Identities = 79/163 (48%), Positives = 94/163 (57%)
 Frame = -1

Query: 648 YSREPDNPAKSCKAXGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 469
           YSR P+N  KSCKA GS+LRVHFKNT+E A     M LR               +P RR 
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAA-----MALRG--------------MPLRRA 46

Query: 468 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNXESNADNKTLDVDRXVIDHIQVNRAP 289
              +    + K+    +           L LL+N ESNA+ K LDVD  VI+HI V RA 
Sbjct: 47  QAFLNHVKEHKEIVPFRR---------FLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 97

Query: 288 CLRRRTYRXHGRINPYMXXPCHIEVCXSEREDAVARVAPTDDA 160
            LRRRTYR HGRINPYM  PCHIEV  +E+ED V++  PTDDA
Sbjct: 98  KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK--PTDDA 138


>U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical
           protein C25G6.5 protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 463 AVEATEWNTLFLFN--HVFEVTNSTTERHLSDCHCGLICVLKVN 588
           AV A  W  L +F+  + FE+ NS +    S CHC  +C   +N
Sbjct: 278 AVFAVAWLPLNVFHIFNTFELVNSFSVTTFSICHCLAMCSACLN 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,972,107
Number of Sequences: 27780
Number of extensions: 215567
Number of successful extensions: 480
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)