Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N21
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi...   209   1e-54
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi...   208   2e-54
At5g18420.1 68418.m02168 expressed protein non-consensus GC dono...    28   6.2  

>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
           to ribosomal protein GI:19101 from [Hordeum vulgare]
          Length = 175

 Score =  209 bits (511), Expect = 1e-54
 Identities = 103/162 (63%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
 Frame = -1

Query: 651 RYSREPDNPAKSCKAXGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRR 472
           +YS+EPDN  KSCKA GS+LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF R
Sbjct: 3   KYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTR 62

Query: 471 FNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNXESNADNKTLDVDRXVIDHIQVNR 295
           F  GVGR AQAK +    QGRWP KSA+F+L LL+N ESNA+ K LDVD   I HIQVN+
Sbjct: 63  FCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQ 122

Query: 294 APCLRRRTYRXHGRINPYMXXPCHIEVCXSEREDAVARVAPT 169
           A   RRRTYR HGRINPYM  PCHIE+  SE+E+ V +   T
Sbjct: 123 AAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPET 164


>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
           to GB:P51413 from [Arabidopsis thaliana]; similar to
           ESTs gb|L33542 and gb|AA660016
          Length = 176

 Score =  208 bits (509), Expect = 2e-54
 Identities = 102/162 (62%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
 Frame = -1

Query: 651 RYSREPDNPAKSCKAXGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRR 472
           +YS+EPDN  KSCKA G++LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF R
Sbjct: 3   KYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTR 62

Query: 471 FNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNXESNADNKTLDVDRXVIDHIQVNR 295
           F  GVGR AQAK +    QGRWP KSA+F+L LL+N ESNA+ K LDVD   I HIQVN+
Sbjct: 63  FCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQ 122

Query: 294 APCLRRRTYRXHGRINPYMXXPCHIEVCXSEREDAVARVAPT 169
           A   RRRTYR HGRINPYM  PCHIE+  SE+E+ V +   T
Sbjct: 123 AAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPET 164


>At5g18420.1 68418.m02168 expressed protein non-consensus GC donor
           splice site at exon 1, unknown (C40) protein, Homo
           sapiens, EMBL:AF103798
          Length = 441

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
 Frame = -1

Query: 576 NTYETAMAIRKMPLR--RAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPK 403
           N Y  A+    M L     V  L   +E  +          +  C  AKQ    Q R  +
Sbjct: 333 NDYYEALGNMDMSLHSMEVVNRLTTAVELPKDFIRMYITNCISSCENAKQDKYMQNRLVR 392

Query: 402 KSAEFLLQLLRNXESNADNKTLDVDRXVIDHIQVNRAPCLRR 277
               FL  L+RN   N  +  ++V    I+  +V  A  L R
Sbjct: 393 LVCVFLQSLIRNKIINVKDLFIEVQAFCIEFSRVREAAGLFR 434


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,312,674
Number of Sequences: 28952
Number of extensions: 199753
Number of successful extensions: 473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)