Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N20
         (588 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   4.4  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   7.7  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   7.7  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 145 RPFRIRFTAHT 113
           RPF +RF  HT
Sbjct: 483 RPFEVRFNPHT 493


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 380 VLFGCEILKIIPGRV 424
           +L GC IL   PGR+
Sbjct: 282 ILGGCHILVATPGRL 296


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 218 SWPQNLQYLP 189
           S P NLQYLP
Sbjct: 166 SCPMNLQYLP 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,364
Number of Sequences: 336
Number of extensions: 2865
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)