Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N20
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...   155   3e-39
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    29   0.50 
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    27   2.7  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    26   3.5  
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    25   8.2  

>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score =  155 bits (377), Expect = 3e-39
 Identities = 80/146 (54%), Positives = 101/146 (69%), Gaps = 1/146 (0%)
 Frame = +2

Query: 149 MSALXQLKQHSTVV-ADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGK 325
           MS+L QLK   TVV +DTGDFE++ +YKP DATTNPSLIL+A+   QY  ++D A+ Y K
Sbjct: 1   MSSLEQLKATGTVVVSDTGDFESIAKYKPQDATTNPSLILAASKKPQYAALVDAAVDYAK 60

Query: 326 DNGSSIEXQVAETLDMLSVLFGCEILKIIPGRVSVEVDAXLSFDKDASIAKAIKFINLFA 505
             G SI  Q+    D L + FG +IL I+PGRVS EVDA  SFD   +I KA   I L+ 
Sbjct: 61  AKGGSINSQIEIAFDRLLIEFGTKILAIVPGRVSTEVDARYSFDTQTTIEKARHLIKLYE 120

Query: 506 EHGIKKXRILIKLASTWEGIQAAKEL 583
             GI + R+LIK+AST+EGIQAAK+L
Sbjct: 121 AEGIGRERVLIKIASTYEGIQAAKQL 146


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -1

Query: 516 IPCSANKLINLIAFAMLASLSNDNXASTSTDTRPGIIFNISHPKSTLSISKVSATCXSME 337
           +P S NK+ +   F  +     +N    S+ ++   I N S P   +S + +SAT  S+E
Sbjct: 150 VPRSLNKIHDPSRF--IKDNDVENRIHVSSASKVASISNTSKPNPIVSENPISATSVSIE 207

Query: 336 LPL 328
           +P+
Sbjct: 208 IPI 210


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -3

Query: 397 FTPKKHTQHIQSFSHLXFNGASIILSIFNS 308
           FTPK +    ++++   FNG+ + +S++N+
Sbjct: 166 FTPKGNPSAKETYNVYEFNGSGVAMSMYNT 195


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 110 VSMSGEPD-TKRTKMSALXQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQ 286
           VS S  PD TKR   S L ++K    +       ++ K+ KP+   T+  + L+ A M  
Sbjct: 141 VSQSFFPDVTKRLPCSCLSEIKNIDDLGLKQRILDSYKKQKPSGQLTSMQIELAKA-MFN 199

Query: 287 YQHI 298
           YQ +
Sbjct: 200 YQDV 203


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 395 HTQKAHSAYPKFQPLVXQWSFHYPF 321
           H Q+ +++ PKF P V Q   H PF
Sbjct: 152 HLQELYASNPKFYPCVNQIELH-PF 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,532
Number of Sequences: 5004
Number of extensions: 46237
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)