BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_N20 (588 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr... 155 3e-39 SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 29 0.50 SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 27 2.7 SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 26 3.5 SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc... 25 8.2 >SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr 3|||Manual Length = 322 Score = 155 bits (377), Expect = 3e-39 Identities = 80/146 (54%), Positives = 101/146 (69%), Gaps = 1/146 (0%) Frame = +2 Query: 149 MSALXQLKQHSTVV-ADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGK 325 MS+L QLK TVV +DTGDFE++ +YKP DATTNPSLIL+A+ QY ++D A+ Y K Sbjct: 1 MSSLEQLKATGTVVVSDTGDFESIAKYKPQDATTNPSLILAASKKPQYAALVDAAVDYAK 60 Query: 326 DNGSSIEXQVAETLDMLSVLFGCEILKIIPGRVSVEVDAXLSFDKDASIAKAIKFINLFA 505 G SI Q+ D L + FG +IL I+PGRVS EVDA SFD +I KA I L+ Sbjct: 61 AKGGSINSQIEIAFDRLLIEFGTKILAIVPGRVSTEVDARYSFDTQTTIEKARHLIKLYE 120 Query: 506 EHGIKKXRILIKLASTWEGIQAAKEL 583 GI + R+LIK+AST+EGIQAAK+L Sbjct: 121 AEGIGRERVLIKIASTYEGIQAAKQL 146 >SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1328 Score = 29.1 bits (62), Expect = 0.50 Identities = 18/63 (28%), Positives = 32/63 (50%) Frame = -1 Query: 516 IPCSANKLINLIAFAMLASLSNDNXASTSTDTRPGIIFNISHPKSTLSISKVSATCXSME 337 +P S NK+ + F + +N S+ ++ I N S P +S + +SAT S+E Sbjct: 150 VPRSLNKIHDPSRF--IKDNDVENRIHVSSASKVASISNTSKPNPIVSENPISATSVSIE 207 Query: 336 LPL 328 +P+ Sbjct: 208 IPI 210 >SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 418 Score = 26.6 bits (56), Expect = 2.7 Identities = 9/30 (30%), Positives = 20/30 (66%) Frame = -3 Query: 397 FTPKKHTQHIQSFSHLXFNGASIILSIFNS 308 FTPK + ++++ FNG+ + +S++N+ Sbjct: 166 FTPKGNPSAKETYNVYEFNGSGVAMSMYNT 195 >SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 652 Score = 26.2 bits (55), Expect = 3.5 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Frame = +2 Query: 110 VSMSGEPD-TKRTKMSALXQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQ 286 VS S PD TKR S L ++K + ++ K+ KP+ T+ + L+ A M Sbjct: 141 VSQSFFPDVTKRLPCSCLSEIKNIDDLGLKQRILDSYKKQKPSGQLTSMQIELAKA-MFN 199 Query: 287 YQHI 298 YQ + Sbjct: 200 YQDV 203 >SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces pombe|chr 1|||Manual Length = 283 Score = 25.0 bits (52), Expect = 8.2 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -2 Query: 395 HTQKAHSAYPKFQPLVXQWSFHYPF 321 H Q+ +++ PKF P V Q H PF Sbjct: 152 HLQELYASNPKFYPCVNQIELH-PF 175 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,340,532 Number of Sequences: 5004 Number of extensions: 46237 Number of successful extensions: 110 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 108 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 110 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 254167452 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -