Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N20
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312...    87   1e-17
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    30   1.6  
12_01_0740 + 6646471-6649407                                           28   6.3  
12_01_0722 + 6355972-6359031                                           28   6.3  
01_01_0205 + 1764034-1767601,1767934-1767944                           28   6.3  
12_01_0824 + 7601811-7602598,7603690-7605730,7605762-7605767,760...    27   8.4  
04_04_1498 + 34002677-34003104,34004427-34004532,34004643-340048...    27   8.4  

>08_01_0355 -
           3122374-3122520,3122912-3123047,3123124-3123221,
           3123724-3123801,3123876-3123945,3124452-3124516,
           3124606-3124686,3124822-3124926,3125002-3125085,
           3125175-3125250,3125358-3125436,3125526-3125646,
           3125768-3125827
          Length = 399

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 45/148 (30%), Positives = 85/148 (57%), Gaps = 3/148 (2%)
 Frame = +2

Query: 149 MSALXQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGME--QYQHILDKAIKYG 322
           ++ L  +   S +V DT  F+  +++ PT AT + SL+L  AG+   +++  +D A+  G
Sbjct: 63  VTELDAVASFSEIVPDTVVFDDFEKFAPTAATVSSSLLLGIAGLPDTKFKSAIDTALADG 122

Query: 323 KDNG-SSIEXQVAETLDMLSVLFGCEILKIIPGRVSVEVDAXLSFDKDASIAKAIKFINL 499
           + N     E +++  L       G E+  ++PGRVS E+DA L++D    I +  + + L
Sbjct: 123 ECNTMEKPEDRMSCFLTKALANVGAEMAHLVPGRVSTEIDARLAYDTQGIIQRVHELLKL 182

Query: 500 FAEHGIKKXRILIKLASTWEGIQAAKEL 583
           +++H +   R+L K+ +TW+GI+A++ L
Sbjct: 183 YSDHDVLSERLLFKIPATWQGIEASRLL 210


>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
            14072261-14072404,14072528-14072761,14072836-14073981,
            14074863-14074922,14075178-14075420,14075509-14075607,
            14076196-14076367,14076597-14076735,14077514-14077624,
            14077695-14077797,14077885-14077962,14078054-14078122,
            14078203-14078275,14078891-14078975,14079473-14079536,
            14079963-14080073,14080139-14080213,14080306-14080398,
            14080982-14081056,14081172-14081261
          Length = 1259

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 501  NKLINLIAFAMLASLSNDNXASTSTDTRPGIIFNISHP 388
            N +++++AF  +A  S+ N  STS     G + +I+ P
Sbjct: 897  NSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASP 934


>12_01_0740 + 6646471-6649407
          Length = 978

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = -3

Query: 382 HTQHIQSFSHLXFNGASIILSIFNSFIKNVLILFHTSSREY*AWICSSICRLIFFHGLKI 203
           H Q  Q  + L + G  I +S     I   L+L   S+ E+   I SSI  L   HGL +
Sbjct: 786 HGQTYQFTAALTYKGNDITISK----ILRSLVLIDVSNNEFDGSIPSSIGELALLHGLNM 841

Query: 202 S 200
           S
Sbjct: 842 S 842


>12_01_0722 + 6355972-6359031
          Length = 1019

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = -3

Query: 382 HTQHIQSFSHLXFNGASIILSIFNSFIKNVLILFHTSSREY*AWICSSICRLIFFHGLKI 203
           H Q  Q  + L + G  I +S     I   L+L   S+ E+   I SSI  L   HGL +
Sbjct: 827 HGQTYQFTAALTYKGNDITISK----ILRSLVLIDVSNNEFDGSIPSSIGELALLHGLNM 882

Query: 202 S 200
           S
Sbjct: 883 S 883


>01_01_0205 + 1764034-1767601,1767934-1767944
          Length = 1192

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 516 IPCSANKLINLIAFAMLASLSNDNXASTSTDTRPGIIF 403
           IP   NKLINL++  +     NDN   +  ++   IIF
Sbjct: 148 IPMGINKLINLVSLDLSKRYVNDNSDISFNESDDEIIF 185


>12_01_0824 +
           7601811-7602598,7603690-7605730,7605762-7605767,
           7606142-7606291
          Length = 994

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 104 SLVSMSGEPDTKRTKMSALXQLKQHSTVVADTGD-FEAMKEY 226
           + VS+S +PD  R   S L QLKQH +      +  + ++EY
Sbjct: 217 AFVSVSQKPDMVRLLTSLLLQLKQHPSHACGVQELIDNLREY 258


>04_04_1498 +
           34002677-34003104,34004427-34004532,34004643-34004811,
           34004901-34005088,34005644-34005763
          Length = 336

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +2

Query: 95  CNISLVSMSGEPDTKRTKMSALXQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILS 268
           CN  L  + G   T   KM+ L  L +H T +         K++KP++  T P  +++
Sbjct: 203 CNDELRVVFGTDTTDMFKMNKL--LAKHITPLDPKDQIREAKKFKPSNVATQPMPLIN 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,150,838
Number of Sequences: 37544
Number of extensions: 258834
Number of successful extensions: 519
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)