Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N20
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)                69   3e-12
SB_56029| Best HMM Match : SEA (HMM E-Value=4.7)                       31   0.70 
SB_49926| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_17636| Best HMM Match : RPE65 (HMM E-Value=7.8e-12)                 28   6.5  
SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_30292| Best HMM Match : fn3 (HMM E-Value=1.2e-12)                   27   8.6  

>SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)
          Length = 224

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 32/46 (69%), Positives = 39/46 (84%)
 Frame = +2

Query: 446 LSFDKDASIAKAIKFINLFAEHGIKKXRILIKLASTWEGIQAAKEL 583
           LSFD +AS+AKA+KFI L+ E GI K R+LIKL+STWEGIQAA+ L
Sbjct: 2   LSFDVEASVAKALKFIELYKEAGISKERVLIKLSSTWEGIQAARIL 47


>SB_56029| Best HMM Match : SEA (HMM E-Value=4.7)
          Length = 111

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +2

Query: 389 GCEILKIIPGRVSVEVDAXLSFDKDASIA 475
           GCE+L+  PG  SV VDA + FDK A+++
Sbjct: 50  GCEVLRFRPG--SVVVDAIVYFDKVANVS 76


>SB_49926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 558 SQVEANLIKILXFLIPCSANKLINLIAFAMLASLSNDN 445
           + V ANLI  + F +  S  +LINL  + ++A  S +N
Sbjct: 228 NNVAANLISSMRFYVMDSIGRLINLNGYRIVADNSGEN 265


>SB_17636| Best HMM Match : RPE65 (HMM E-Value=7.8e-12)
          Length = 366

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 462 SLSNDNXASTS-TDTRPGIIFNISHPKSTLSISKVSATCXSMELPLSFPY 316
           ++S DN    S T   PG ++N +      + ++V A   S E P S PY
Sbjct: 188 NMSFDNEVWLSNTSVSPGRMYNFTIDLPGKTCTRVQADTASCEFPFSHPY 237


>SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1312

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
 Frame = +2

Query: 53  ISTLIKFVLLTYSQCNISLVSMSGEPDTKRTKMSALXQLKQHS--TVVADTGDFEAMKEY 226
           +  L  +V+ +Y+     L   +    T  T M+     + HS  T+V      E  ++ 
Sbjct: 461 VQDLSTYVVTSYADIESWLALGNKNRATACTGMNDKSS-RSHSVFTIVMSQTQTEIFEDT 519

Query: 227 KPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGSSIEXQVAETLDMLSVLFGCEILK 406
           +     T+   ++  AG E+  H+L+  +    + G SI   +     ++S+L   E+ K
Sbjct: 520 EAQITKTSKINLIDLAGSERASHVLNDEVITSAEEGGSINKSLHTLGKVISLLSDKELNK 579


>SB_30292| Best HMM Match : fn3 (HMM E-Value=1.2e-12)
          Length = 519

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/91 (24%), Positives = 40/91 (43%)
 Frame = +2

Query: 71  FVLLTYSQCNISLVSMSGEPDTKRTKMSALXQLKQHSTVVADTGDFEAMKEYKPTDATTN 250
           FV        I++   SG+ +T   +      L +++T+V        +  +KPTDA T 
Sbjct: 292 FVFRDIPSGRINMFPFSGQNETIDNQYKRRVTLLENNTMV--------ILPFKPTDAVTF 343

Query: 251 PSLILSAAGMEQYQHILDKAIKYGKDNGSSI 343
            S +LS  G    + ++   +   KD  S++
Sbjct: 344 TSKLLSHDGKSIQESLVTVKVDKPKDGASTM 374


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,900,932
Number of Sequences: 59808
Number of extensions: 322689
Number of successful extensions: 568
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)