Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N20
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12230.1 68414.m01415 transaldolase, putative similar to Swis...    82   3e-16
At3g13210.1 68416.m01653 crooked neck protein, putative / cell c...    31   0.43 
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ...    28   5.3  
At5g35995.1 68418.m04334 F-box family protein contains F-box dom...    27   7.0  
At4g36380.1 68417.m05169 cytochrome P450 90C1 (CYP90C1) / rotund...    27   9.3  
At4g09560.1 68417.m01571 protease-associated zinc finger (C3HC4-...    27   9.3  
At3g49990.1 68416.m05466 expressed protein                             27   9.3  
At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containi...    27   9.3  

>At1g12230.1 68414.m01415 transaldolase, putative similar to
           Swiss-Prot:P30148 transaldolase B (EC 2.2.1.2)
           [Escherichia coli O157:H7]
          Length = 405

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 52/189 (27%), Positives = 97/189 (51%), Gaps = 6/189 (3%)
 Frame = +2

Query: 35  SGIALTISTLIKFVLLTYSQCNISLVSMSGEPDTKRTKM---SALXQLKQHSTVVADTGD 205
           +G ++T    + F L       ++  S S  P +   +    + L  +   S +V DT  
Sbjct: 27  AGFSVTPLPAVNFSLRRSIPRILASASSSSSPASSSLEAGENNELNAVSAFSEIVPDTVV 86

Query: 206 FEAMKEYKPTDATTNPSLILSAAGMEQ--YQHILDKAIKYGKDNG-SSIEXQVAETLDML 376
           F+  + + PT AT + +L+L   G+    +++ +D A+      G  + E +++   +  
Sbjct: 87  FDDFERFPPTAATVSSALLLGICGLPDTIFRNAVDMALADSSCAGLETTESRLSCFFNKA 146

Query: 377 SVLFGCEILKIIPGRVSVEVDAXLSFDKDASIAKAIKFINLFAEHGIKKXRILIKLASTW 556
            V  G +++K++PGRVS EVDA L++D +  I K    + L+ E  +   R+L K+ +TW
Sbjct: 147 IVNVGGDLVKLVPGRVSTEVDARLAYDTNGIIRKVHDLLRLYNEIDVPHDRLLFKIPATW 206

Query: 557 EGIQAAKEL 583
           +GI+AA+ L
Sbjct: 207 QGIEAARLL 215


>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 657

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 20/83 (24%), Positives = 34/83 (40%)
 Frame = +2

Query: 122 GEPDTKRTKMSALXQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHIL 301
           GE +  R     L    +H  V  D   FEA       D     ++     G+++ + I 
Sbjct: 497 GELERTRALYERLLDRTKHCKVWVDFAKFEASAAEHKEDEEEEDAIERKKDGIKRAREIF 556

Query: 302 DKAIKYGKDNGSSIEXQVAETLD 370
           D+A  Y KD+   ++ + A  L+
Sbjct: 557 DRANTYNKDSTPELKEERAMLLE 579


>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
            contains Pfam domain, PF00642: Zinc finger
            C-x8-C-x5-C-x3-H type (and similar)
          Length = 1230

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +2

Query: 173  QHSTVVADTGDFEAMKEYKPTDATTNPSLILS----AAGMEQYQHILDKAIKYGKDNGSS 340
            Q++TV AD G+    K  +  D T   S+ ++    A  + Q  H LD      K +   
Sbjct: 823  QYNTVRAD-GNHNTTKTLE--DETNGGSVSINGSVHAPNLNQESHFLDFPSPTPKSSPED 879

Query: 341  IEXQVAETLDMLS 379
            +E Q AET+  LS
Sbjct: 880  LEAQAAETIQSLS 892


>At5g35995.1 68418.m04334 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 455

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 276 PAAESIKLGFVVASVGLYSFMASKSPV 196
           PA +++ LG VVA   LY+++ S  PV
Sbjct: 153 PALKTLSLGAVVAKPALYNWLISGCPV 179


>At4g36380.1 68417.m05169 cytochrome P450 90C1 (CYP90C1) /
           rotundifolia3 (ROT3) identical  to Cytochrome P450 90C1
           (ROTUNDIFOLIA3) (SP:Q9M066) [Arabidopsis thaliana];
          Length = 524

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +2

Query: 185 VVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGSSIEXQVAET 364
           ++ D GD E  K+ +P+D  +   + +   G E     +  A+K+  DN  ++   V E 
Sbjct: 295 LLRDGGDSE--KQSQPSDFVSGKIVEMMIPGEETMPTAMTLAVKFLSDNPVALAKLVEEN 352

Query: 365 LDM 373
           ++M
Sbjct: 353 MEM 355


>At4g09560.1 68417.m01571 protease-associated zinc finger
           (C3HC4-type RING finger) family protein contains Pfam
           domain, PF02225: protease-associated (PA) domain and
           Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
           finger); similar to ReMembR-H2 protein JR702
           [Arabidopsis thaliana] gi|6942149|gb|AAF32326
          Length = 431

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 395 EILKIIPGRVSVEVDAXLSFDKDASIAKAIKFINLFA 505
           E+LK   GR   EV    SF+  A    AI FI+L A
Sbjct: 123 EVLKEYAGRTDFEVWLMPSFETSAWSIMAISFISLLA 159


>At3g49990.1 68416.m05466 expressed protein
          Length = 502

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +2

Query: 203 DFEAMKEY-KPTDATTNPSLILSAAGMEQYQHILDKAIKYGK--DNGSSIE 346
           D+E  ++Y  P D   N   +     ++   H++ + ++YG+  DNG+  E
Sbjct: 299 DYELEEKYMNPADILKNSDSVRDKEEVDTAAHVIRRTVEYGENFDNGNEDE 349


>At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 836

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 437 DAXLSFDKDASIAKAIKFINLFAEHGIKKXRILIK 541
           D  + + KDAS+  A+K++      GIK    +I+
Sbjct: 527 DVLMIYIKDASVDLALKWLRFMGSSGIKTNNFIIR 561


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,836,148
Number of Sequences: 28952
Number of extensions: 224924
Number of successful extensions: 533
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)