BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_N17 (440 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po... 26 3.0 SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 25 6.8 SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 24 9.0 SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 24 9.0 >SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 230 Score = 25.8 bits (54), Expect = 3.0 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Frame = +1 Query: 70 NKLPFCDDQEF*FAGQQHIRC--*CFSTRRD 156 N PFC D + QQH +C C +R+D Sbjct: 148 NSWPFCLDHSYILEDQQHNKCLVHCNQSRKD 178 >SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces pombe|chr 3|||Manual Length = 486 Score = 24.6 bits (51), Expect = 6.8 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +1 Query: 49 CRFSVATNKLPFCDDQEF*FAGQQHIRC*CFST 147 CR S+ TN+LP C + + + G + C T Sbjct: 134 CRKSMQTNRLPGCTAESWGYHGNSGEKFNCSKT 166 >SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccharomyces pombe|chr 1|||Manual Length = 200 Score = 24.2 bits (50), Expect = 9.0 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = +3 Query: 150 ARWRLWRSEHFSLLGGKKGR 209 A +R+W H+ +L G KG+ Sbjct: 107 APFRVWYETHYGILMGSKGK 126 >SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosaccharomyces pombe|chr 1|||Manual Length = 200 Score = 24.2 bits (50), Expect = 9.0 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = +3 Query: 150 ARWRLWRSEHFSLLGGKKGR 209 A +R+W H+ +L G KG+ Sbjct: 107 APFRVWYETHYGILMGSKGK 126 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,385,296 Number of Sequences: 5004 Number of extensions: 22519 Number of successful extensions: 42 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 42 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 160149590 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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