Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N17
         (440 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14)                27   6.9  
SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)                   27   9.1  

>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1353

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 103 RILGHRKMAIYLWQXKNDNEL 41
           RI+G RK  I+ W+ K +NEL
Sbjct: 473 RIMGERKPRIHAWERKEENEL 493


>SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14)
          Length = 337

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 253 LXSPIRALSSVRWGNLPFLPPSKEKCSDRHNRH 155
           L   + A+  V W +L FLPP++ +  D HN++
Sbjct: 130 LAGAVIAVLFVAWLSLKFLPPTR-RVGDYHNKY 161


>SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)
          Length = 1332

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 159  RLWRSEHFSLLGGKKGRFPHRTELKARIGEXSXXTXCXGKIIL 287
            +LW    F + G KKG FP+  ++  R+ +      C   +IL
Sbjct: 1080 QLWLLSRFKINGTKKGCFPYNKQIFWRLNKVK-KKECSHTVIL 1121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,045,085
Number of Sequences: 59808
Number of extensions: 187185
Number of successful extensions: 381
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)