Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_N17
         (440 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25270.1 68418.m02996 expressed protein                             27   5.6  
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ...    27   7.4  
At5g45680.1 68418.m05616 FK506-binding protein 1 (FKBP13) identi...    26   9.8  
At5g24740.1 68418.m02920 expressed protein                             26   9.8  
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro...    26   9.8  
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ...    26   9.8  

>At5g25270.1 68418.m02996 expressed protein
          Length = 540

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 180 NVPTATTAIAPSAKALAADVLLPCELEFLVIAKWQFICGNXKTTMSCDG 34
           + P++TT  APS +  +  +  P  L   V+A++Q I    +++   DG
Sbjct: 330 STPSSTTDPAPSTRGPSEPLRNPVALVIPVVARYQQISLGGRSSTGLDG 378


>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
           ribosomal protein S27A (RPS27aC) identical to GI:166933,
           GI:166934
          Length = 157

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 324 KHKRVHVSIILRTKLFFRCXMXXYYXRRFAP*APCGGGTFLSCH 193
           KHK+V ++++   K+     +     R+  P A CG GTF++ H
Sbjct: 94  KHKKVKLAVLQFYKIDGSGKVQRL--RKECPNATCGAGTFMASH 135


>At5g45680.1 68418.m05616 FK506-binding protein 1 (FKBP13) identical
           to Probable FKBP-type peptidyl-prolyl cis-trans
           isomerase 3, chloroplast precursor (Ppiase) (Rotamase)
           (SP:Q9SCY2) / FK506 binding protein 1 (GI:21535744)
           [Arabidopsis thaliana]; contains Pfam PF00254:
           peptidyl-prolyl cis-trans isomerase, FKBP-type
          Length = 208

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 40  TTHCRFSVATNKLPFCD 90
           TT C FSV+ + L FCD
Sbjct: 81  TTSCEFSVSPSGLAFCD 97


>At5g24740.1 68418.m02920 expressed protein
          Length = 3306

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 8   STLVPVQSVPSQLIVVFXLPQINCHFA 88
           S ++P +S+  QL V   LP  N HF+
Sbjct: 633 SCIIPEESILKQLEVEATLPMFNVHFS 659


>At5g07760.1 68418.m00888 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 853

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 197 ATK*REMFRPPQPPSRLVLKH*QRMCCC 114
           A + R + RPP PP  L +   + +CCC
Sbjct: 61  AMRRRVLPRPPPPPPPLPMFDAEVLCCC 88


>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
           ribosomal protein S27A (RPS27aB) identical to GI:166936
          Length = 157

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 324 KHKRVHVSIILRTKLFFRCXMXXYYXRRFAP*APCGGGTFLSCH 193
           KHK+V ++++   K+     +     R+  P A CG GTF++ H
Sbjct: 94  KHKKVKLAVLQFYKVDGSGKVQRL--RKECPNATCGAGTFMASH 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,449,000
Number of Sequences: 28952
Number of extensions: 126297
Number of successful extensions: 275
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)